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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgttgacttattcgaaacaaatctcaaatgatgccaaatgttagatttacatccctacgctaatttgctgtgtttcacttttaattcaccttgcagTCACTAATGCTTGTCACATCCTTAAACCCG

Basic information

species Glycine max
transcript GLYMA02G01920.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01920.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 15
gtgagttgttg--acttattcgaaacaaa-----tctcaaatgatgccaaatgttagatttacatccctacgctaatttgctgtgtttcacttttaattcaccttgcagTCACTAATGCTTGTCACATCCTTAAACCCG
|| ||||| ||  | | ||| ||  ||||     ||| |    ||    ||  ||| || |   |    |   |   ||||| | |  || ||   |||  |||||||||||||||||||||||||||| || ||||| 
gtaagttgatgcaattcattagagccaaacttattcttatcatattttgaaacttaaatctgagtgatcatattttcttgctatttgacaattgacatt-gccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192310777|gb|FK000291.1|FK000291
EST:     TGAGAGGCATTCAAGCTAACAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTAATGCTTGTCACATCCTTAAACCCG
genomic: TGAGAGGCATTCAAGCTAACAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgtt ... caccttgcagTCACTAATGCTTGTCACATCCTTAAACCCG
EST: gi|193666295|gb|FK611808.1|FK611808
EST:     TGAGAGGCATTCAAGCTAACAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTAATGCTTGTCACATCCTTAAACCCG
genomic: TGAGAGGCATTCAAGCTAACAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgtt ... caccttgcagTCACTAATGCTTGTCACATCCTTAAACCCG
EST: gi|192310922|gb|FG998898.1|FG998898
EST:     TGAGAGGCATTCAAGCTAACAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTAATGCTTGTCACATCCTTAAACCCG
genomic: TGAGAGGCATTCAAGCTAACAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgtt ... caccttgcagTCACTAATGCTTGTCACATCCTTAAACCCG
EST: gi|209717304|gb|BW659019.1|BW659019
EST:     GCATTCAAGCTAACAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTAATGCTTGTCACATCCTTAAACCCG
genomic: GCATTCAAGCTAACAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttgtt ... caccttgcagTCACTAATGCTTGTCACATCCTTAAACCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagatttacatccctacgctaatttgctgtgtttcacttttaattcaccttgcagTCACTAATGCTTGTCACATCCTTAAACCCG
                                     ttttaat  putative branch site (score: 3)
                                           ttcacctt  CT-rich tract
                               tttcacttttaatt  TA-rich tract