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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cactctaattctgtaaatatatgcataagatattgtagacatctttatggttcttatactagattatggccttgatgtgcttctgttaaaatgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAGAAATGCTTGGAACAGTGGGCCCTCCTGTACCAAATGTGGATGTTTGCCT

Basic information

species Glycine max
transcript GLYMA01G43470.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G43470.3 (Glycine max), 3'ss of exon 14
lower sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 14
--------------------------------------------------------------------------------cactctaattct--gtaaatatatgcataagatattgtagacatctttatggttct---------tatactagattatggccttga---tgtgcttc-tgttaaaatgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAGAAATGCTTGGAACAGTGGGCCCTCCTGTACCAAATGTGGATGTTTGCCT
                                                                                |  |   |   |    ||| |||||   ||  | || |   | | | ||    | |           | ||| ||  ||   |||    | |  ||  | ||||  | ||  |||||||||||||||| |||||||| || ||||||||| | |||||||||||    |||||||| |||||||||||||| ||||||||||| || || |||||
gtatgcagtccattgaaattagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaacatatgtccaaagtttttttcccgtttctagtactgtgcaaagtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtagGTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTAGCATGCTTGGTACAGTGGGCCCTCCAGTACCAAATGTTGACGTATGCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254347181|gb|GR856851.1|GR856851
EST:     GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATG                         GTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
genomic: GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATGgtatgctctt ... atgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
EST: gi|22525607|gb|BU084418.1|BU084418
EST:     GTGACTTGTGCTCATGTCCTACAGGGATATG                         GTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
genomic: GTGACTTGTGCTCATGTCCTACAGGGATATGgtatgctctt ... atgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
EST: gi|6666183|gb|AW277642.1|AW277642
EST:     GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATG                         GTCTGACTGANACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
genomic: GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATGgtatgctctt ... atgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
EST: gi|192295718|gb|FG990572.1|FG990572
EST:     GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATG                         GTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
genomic: GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATGgtatgctctt ... atgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
EST: gi|120533313|gb|EH261446.1|EH261446
EST:     GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATG                         GTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
genomic: GGAAGGTTACTTACGGGTGGTGACTTGTGCTCATGTCCTACAGGGATATGgtatgctctt ... atgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
EST: gi|22525677|gb|BU084488.1|BU084488
EST:     GTGACTTGTGCTCATGTCCTACAGGGATATG                         GTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG
genomic: GTGACTTGTGCTCATGTCCTACAGGGATATGgtatgctctt ... atgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatggttcttatactagattatggccttgatgtgcttctgttaaaatgaaaatagGTCTGACTGAAACCTGTGCGGGAACCTTTGTCTCATTACCAAATGAAATAGAAATGCTTGGAACAGTGGGCCCTCCTGTACCAAATGTGGATGTTTGCCT
                        ccttgat  putative branch site (score: 5)
                                      tgttaaaatgaaaata  TA-rich tract