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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtgagtactatgaaaggagtactgtgaaggttttcaccttgctcagcatgtttttggttatttaataaagttttaatggaaaagttccggttgatgtatcacagGAAACAACGTCACCTGATATACAAGGAAAAGCACAGGCATCAGGAGGTACATCTCGCTTTTCCCGCTTTGGTTTTGGCTCACAACTTTTGCAAAAGACAG

Basic information

species Glycine max
transcript GLYMA01G41790.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283216|gb|BE020777.1|BE020777
EST:     AGCCTAATAGAAGTATTTCTGAGCCAGATATTGGTCGAACCCCAAGACAG                         GAAACAACGTCACCTGATATACAAGGAAAAGCACAGGCATCAGGAGGTACA
genomic: AGCCTAATAGAAGTATTTCTGAGCCAGATATTGGTCGAACCCCAAGACAGgtgtgtgagt ... tgtatcacagGAAACAACGTCACCTGATATACAAGGAAAAGCACAGGCATCAGGAGGTACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtttttggttatttaataaagttttaatggaaaagttccggttgatgtatcacagGAAACAACGTCACCTGATATACAAGGAAAAGCACAGGCATCAGGAGGTACATCTCGCTTTTCCCGCTTTGGTTTTGGCTCACAACTTTTGCAAAAGACAG
        ttatttaataaagttt  TA-rich tract