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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactattcttataagaaaatttccactgtttaattagttctttctgcagcattaattgagccttaacatattatctctgaaactatttgatgcattatatctttgttgtttgaaaactagGTCCGTGGAGCTAGAGCTGAAGAGACTCAAAGCCATGTACACAGAATGTACTTTATGGGACCTAATACTTTTAGAGAACCCTGGCATCTTCCTTACTCAC

Basic information

species Glycine max
transcript GLYMA01G41140.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G41140.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os04g10380.1 (Oryza sativa), 3'ss of exon 14
gtactattcttataagaaaatttccactgtttaattagttctttctgcagcattaattgagccttaacatattatctctgaaactatttgatgcattatatctttg---ttgtttgaaaactagGTCCGTGGAGCT---AGAGCTGAAGAGACTCAAAGCCATGTACACAGAATGTACTTTATGGGACCTAATACTTTTAGAGAACCCTGGCATCTTCCTTACTCAC
                   || ||||      | ||| | ||||||    ||    |||    ||||   | | | ||||    |||||| | |  || ||  | |   |  ||||     ||||| | ||| |||   || || ||||| || ||||||||||  |||||||||||||| ||||||||||| || ||  | ||||| ||||| ||||||||||   
-----------------ggatgtccagaaaccactta-tgctttctatctca--ggttg----ttaaagaaatctttctgcttgtatttgtttcgataaatggtggcactgatttgttctgtagGTACCTGGGGCTAGCAGGGCAGAAGAAACACAAAGCCATGCCCACAGAATGTACTTCATGGGACCTAACACCTTCCGGGAACCTTGGCACCTTCCTTACT---

upper sequence: GLYMA01G41140.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G015291_T01 (Zea mays), 3'ss of exon 6
gtactattcttataagaaaatttccactgtttaattagttctttctgcagcattaattgagccttaacatattatctctgaaactatttgatgcattatatctttgttgtttgaaaactagGTCCGTGGAGCTAGAGCTGAAGAGACTCAAAGCCATGTACACAGAATGTACTTTATGGGACCTAATACTTTTAGAGAACCCTGGCATCTTCCTTACTCAC
  | | | | || ||  ||      ||   || || ||  ||||        || ||  |  |||  ||| || | | || |   ||     |  |  |    ||  | | |    || |||  |  |     || || ||||| ||||| |||||||| |||||||||||||| |||||||||||||||||  |||| ||||||||||| || ||||   
-aaatgtacctagaaagaag-----acgaatttat-agcccttttc------ttgataaactcttg-catgttgtgtttgtactgataaatggtgtgttcctcttcctttgtagGTACCAGGGGCAAG----CAGGGCAGAAGAAACTCAGAGCCATGTCCACAGAATGTACTTCATGGGACCTAATACTTTCCGAGAGCCCTGGCATCTCCCCTACT---

upper sequence: GLYMA01G41140.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv02s0012g00460.t01 (Vitis vinifera), 3'ss of exon 14
gtactattcttataagaaaatttccactgtttaattagttctttctgcagcattaattgagccttaacatattatctctgaaactatttgatgcattatatctttgttgtttgaaaactagGTCCGTGGAGCTAGAGCTGAAGAGACTCAAAGCCATGTACACAGAATGTACTTTATGGGACCTAATACTTTTAGAGAACCCTGGCATCTTCCTTACTCAC
||||     | |||  ||   ||||    |||  ||     ||     |  || |||  ||||  |     ||||| || | || ||||  |||||| ||| ||| |   ||  ||    ||| || ||  | ||||||||||| ||||| ||||||||  |||| |||||||||||||| || |||||||| |||||||||||||||||||||||||| |
gtacatgattgatagcaagtattccttcttttcctt-----ttcaaatatgatcaat--agccacatgtggttatccct-agacaattttctgcattttatgtttctgaatttcaa----gGTGCGGGGGACCAGAGCTGAAGAAACTCAGAGCCATGTTTACAGGATGTACTTTATGGGTCCCAATACTTTCAGAGAACCCTGGCATCTTCCTTACTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatattatctctgaaactatttgatgcattatatctttgttgtttgaaaactagGTCCGTGGAGCTAGAGCTGAAGAGACTCAAAGCCATGTACACAGAATGTACTTTATGGGACCTAATACTTTTAGAGAACCCTGGCATCTTCCTTACTCAC
                            attatatctttgtt  TA-rich tract