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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaatattttttttcttcaaaatatgttcagttttagtcactttcattctaccttttggcattggtctgttttatttgcttgtccactttgcctgtagtagtaatccgtgactgtttctactgtttgcaacttactgaattgaataacagGAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTTCCTCGTCTACCATCTAGTAAAACAACCGGAGTTTTGCCAGAG

Basic information

species Glycine max
transcript GLYMA01G39430.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G39430.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv07s0031g00470.t01 (Vitis vinifera), 3'ss of exon 12
----gttaatattttttttc--ttcaaaatatgttcagtttta---gtcactttcattctaccttttggcattggtctgttttatttgcttgtccactttgcctgtagtagtaatccgtgactgtttctactgtttgcaact-----tactgaattgaataacagGAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTTCCTCGTCTACCATCTAGTAAAACAACCGGAGTTTTGCCAGAG
     ||  | || | | ||  |||  | | | |     ||||    || || ||  |||| || |     |   ||| | |   |       |        |  | ||     | | |   | |   || | |||   |       ||||  ||||  || |||||||||||||||||||||||||| ||||| ||||||   |||| |||  |||||||| |||||||||||||||| || || ||||| || |||
gtaatttgcttttctctctcccttcttactctctctctctttatctatctctctccctctatctgtccatctaactctatctccctccaccccctctccaatcaattgtttcttttcctccttttacatattttttatgagcactaatacttcattgttta-cagGAATACAATATCTGCTTCACAACAGTTGAAAGATCTCCAGATGGATCGGTTCCTCGTTTACCATCTAGTAAAACGACTGGGGTTTTACCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207810980|gb|GD785505.1|GD785505
EST:     AATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAG                         GAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTT
genomic: AATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGgttaatattt ... tgaataacagGAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTT
EST: gi|193543700|gb|FK501605.1|FK501605
EST:     AATATATATTGCTTCTGGACTTCAACAGTCTTTACCCATCTATTATTCAG                         GAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTT
genomic: AATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGgttaatattt ... tgaataacagGAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTT
EST: gi|207751598|gb|GD723563.1|GD723563
EST:     AATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAG                         GAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTT
genomic: AATATATATTGCTTCTGGACTTCAACAGTCTTTACCCTTCTATTATTCAGgttaatattt ... tgaataacagGAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagtagtaatccgtgactgtttctactgtttgcaacttactgaattgaataacagGAATACAATATCTGCTTCACAACTGTTGAGAGATCTTTGGATGAATCTTTTCCTCGTCTACCATCTAGTAAAACAACCGGAGTTTTGCCAGAG
                                 aacttac  putative branch site (score: 2)
                                          aattgaataa  TA-rich tract