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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaattggagaattttccttgattacagtgtgtttaaatcattcacaatggaatactatttcttatggtatataataagtttttgatgtttctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAGATAAATTGGCTGAACTCCTATCACGCCACATGTAGGAATATTCTGGCGC

Basic information

species Glycine max
transcript GLYMA01G38410.3
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193385092|gb|FK351518.1|FK351518
EST:     TAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193366690|gb|FK332426.1|FK332426
EST:     TTCAATTTTGGTGATTAGAGGTTACTTATCTTTTGTAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTCAATTTTGGTGA-TAGAGGTTACTTATCTTTTG-AACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193439432|gb|FK406741.1|FK406741
EST:     TTCAATTTTGGTTGATAGAGGTTACTTATCTTTTGTAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGT
genomic: TTCAATTTTGGT-GATAGAGGTTACTTATCTTTTG-AACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGT
EST: gi|193320072|gb|FK285985.1|FK285985
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAAACCTTCTAAGTCCCGAGGA
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAA-CCTTCTAAGTCCCGAGGA
EST: gi|208037737|gb|GD834435.1|GD834435
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|214004349|gb|DB989354.1|DB989354
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193651404|gb|FK598145.1|FK598145
EST:     CTTCCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|208304912|gb|GE108647.1|GE108647
EST:     TTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|208032472|gb|GD831755.1|GD831755
EST:     TTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|207691871|gb|GD674384.1|GD674384
EST:     GGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATAATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGA
genomic: GGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCAT-ATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGA
EST: gi|208067273|gb|GD862239.1|GD862239
EST:     TTTCAATTTTGGTTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTTCAATTTTGG-TGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193669554|gb|FK613624.1|FK613624
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193549686|gb|FK509649.1|FK509649
EST:     TTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGTAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTTCAATTTTGGTGATAGAGGTTACTTATCTTTTG-AACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193427039|gb|FK397080.1|FK397080
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|214009216|gb|DB988567.1|DB988567
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTACCATTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193552124|gb|FK508139.1|FK508139
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|207847756|gb|GD818739.1|GD818739
EST:     TTCAATTTTGGTTGATAGAGGTTACTTATCTTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTCAATTTTGG-TGATAGAGGTTACTTATC-TTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|208313603|gb|GE116523.1|GE116523
EST:     TGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|208274127|gb|GE071497.1|GE071497
EST:     GGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: GGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|13790218|gb|BG652809.1|BG652809
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|208143416|gb|GD942434.1|GD942434
EST:     AGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: AGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193644476|gb|FK589942.1|FK589942
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193354353|gb|FK319883.1|FK319883
EST:     TATCTTTTGAACACATTACCTGG                         GCACCATTATTCTAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAG
genomic: TATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCA-TA-TC-AGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAG
EST: gi|193632777|gb|FK581031.1|FK581031
EST:     TTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193356549|gb|FK320966.1|FK320966
EST:     GTTACTTATCTTTTGAACTACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: GTTACTTATCTTTTGAAC-ACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|207717236|gb|GD697213.1|GD697213
EST:     AGGTTACTTATCTTTTGTAACACATTACCT-G                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: AGGTTACTTATCTTTTG-AACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193489562|gb|FK455859.1|FK455859
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193431537|gb|FK397367.1|FK397367
EST:     TTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193418978|gb|FK382698.1|FK382698
EST:     TTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|207711760|gb|GD693140.1|GD693140
EST:     TTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193367518|gb|FK329586.1|FK329586
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193559706|gb|FK513007.1|FK513007
EST:     TTTCAATTTTGGTTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTTCAATTTTGG-TGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|208082649|gb|GD885191.1|GD885191
EST:     TCAATTTTGGTGATTAGAGGTTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TCAATTTTGGTGA-TAGAGG-TTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|208106799|gb|GD901898.1|GD901898
EST:     ATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: ATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|208103288|gb|GD901166.1|GD901166
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCC
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCC
EST: gi|207843077|gb|GD815587.1|GD815587
EST:     CTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|207711371|gb|GD693091.1|GD693091
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|208033075|gb|GD828662.1|GD828662
EST:     TTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|207712991|gb|GD692915.1|GD692915
EST:     AACA-ATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: AACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193392299|gb|FK360124.1|FK360124
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|208102744|gb|GD897485.1|GD897485
EST:     CTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|207835426|gb|GD805997.1|GD805997
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|208186649|gb|GD981669.1|GD981669
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193359719|gb|FK324139.1|FK324139
EST:     TTCAATTTTGGTGATTAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTCAATTTTGGTGA-TAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193607266|gb|FK558733.1|FK558733
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193682055|gb|FK624987.1|FK624987
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|208189532|gb|GD987716.1|GD987716
EST:     TCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193396099|gb|FK361854.1|FK361854
EST:     CTTTCAA-TTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|207721300|gb|GD703701.1|GD703701
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|208158086|gb|GD955165.1|GD955165
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193484005|gb|FK452408.1|FK452408
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193307879|gb|FK273427.1|FK273427
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|207748522|gb|GD720359.1|GD720359
EST:     TTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|207836762|gb|GD807935.1|GD807935
EST:     TTCAATTTTGGTTGATAGAGGTTACTTATCTTTTGTAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: TTCAATTTTGG-TGATAGAGGTTACTTATCTTTTG-AACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193418093|gb|FK381729.1|FK381729
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAG
EST: gi|193338833|gb|FK303130.1|FK303130
EST:     CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCAACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGA
genomic: CTTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGC-ACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatggaatactatttcttatggtatataataagtttttgatgtttctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAGATAAATTGGCTGAACTCCTATCACGCCACATGTAGGAATATTCTGGCGC
                                   ttttgat  putative branch site (score: 4)
                                           tttctcgtcc  CT-rich tract
           tatttcttatggtata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
aaaattggagaattttccttgattacagtgtgtttaaatcattcacaatggaatactatttcttatggtatataataagtttttgatgtttctcgtccagGCACCATATCAGACGAAGTTGATTGACCTGAACCTTCTAAGTCCCGAGGAGATAAATTGGCTGAACTCCTATCACGCCACATGTAGGAATATTCTGGCGC

- - - - - - - ttccttg
- - - - - - - - - - - - - -gtgtgtt
- - - - - - - - - - - - - - - - - - - -cattcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgtt