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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatttttctctatctccttggctacgcatgactactgttgcaagtttctgttttttgttcattttgggttacagttgcaatatgcaagttgctattttaacttgtaaactagtgccacattcgtattcatttgttttggttccctggatttgcagGTTGACGTGACAGATCATATAGAGGGTCATTCTTCATATTTGTGGGCTACACAACAGGTCCTAGATGAACTTGAATTAGATACCTATTATCCCGTTTATA

Basic information

species Glycine max
transcript GLYMA01G37420.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15201810|gb|BI425071.1|BI425071
EST:     CACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT                         GTTGACGTGACAGATCATATAGAGGGTCATTCTTCATATTTGTGGGCTACA
genomic: CACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAATgtaagatttt ... ggatttgcagGTTGACGTGACAGATCATATAGAGGGTCATTCTTCATATTTGTGGGCTACA
EST: gi|15202089|gb|BI425216.1|BI425216
EST:     CACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT                         GTTGACGTGACAGATCATATAGAGGGTCATTCTTCATATTTGTGGGCTACA
genomic: CACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAATgtaagatttt ... ggatttgcagGTTGACGTGACAGATCATATAGAGGGTCATTCTTCATATTTGTGGGCTACA
EST: gi|12773115|gb|BG238042.1|BG238042
EST:     CACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGNGATCCAAAAT                         GTTGACGTGACAGATCATATAGAGGGTCATTCTTCATATTTGTGGGCTACA
genomic: CACAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAATgtaagatttt ... ggatttgcagGTTGACGTGACAGATCATATAGAGGGTCATTCTTCATATTTGTGGGCTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgtaaactagtgccacattcgtattcatttgttttggttccctggatttgcagGTTGACGTGACAGATCATATAGAGGGTCATTCTTCATATTTGTGGGCTACACAACAGGTCCTAGATGAACTTGAATTAGATACCTATTATCCCGTTTATA
                                       ttccctg  CT-rich tract
                       tattcatttgtttt  TA-rich tract