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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataatgcttgatcagatgttattttcatttaatgtaatgctctggttcctttcttaaatccctctatgcaatgccaacaatttctctgtttcttcttaagGATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGTCAGCCAGGAAAGGACAGCCCAA

Basic information

species Glycine max
transcript GLYMA01G35190.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19938441|gb|BQ081721.1|BQ081721
EST:     GTGTGCAACGGAAGCTGGATATGGTAAATCAG                         GATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
genomic: GTGTGCAACGGAAGCTGGATATGGTAAATCAGgtgagttgtt ... tcttcttaagGATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
EST: gi|22927291|gb|BU544430.1|BU544430
EST:     GTGTGCAACGGAAGCTGGATATGGTAAATCAG                         GATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
genomic: GTGTGCAACGGAAGCTGGATATGGTAAATCAGgtgagttgtt ... tcttcttaagGATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
EST: gi|23730262|gb|BU763229.1|BU763229
EST:     GTGTGCAACGGAAGCTGGATATGGTAAATCAG                         GATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
genomic: GTGTGCAACGGAAGCTGGATATGGTAAATCAGgtgagttgtt ... tcttcttaagGATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
EST: gi|26059828|gb|CA802742.1|CA802742
EST:     GTGTGCAACGGAAGCTGGATATGGTAAATCAG                         GATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
genomic: GTGTGCAACGGAAGCTGGATATGGTAAATCAGgtgagttgtt ... tcttcttaagGATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
EST: gi|19348400|gb|BM892932.1|BM892932
EST:     GTGTGCAACGGAAGCTGGATATGGTAAATCAG                         GATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
genomic: GTGTGCAACGGAAGCTGGATATGGTAAATCAGgtgagttgtt ... tcttcttaagGATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
EST: gi|9203919|gb|BE330143.1|BE330143
EST:     GTGTGCAACGGAAGCTGGATATGGTAAATCAG                         GATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
genomic: GTGTGCAACGGAAGCTGGATATGGTAAATCAGgtgagttgtt ... tcttcttaagGATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
EST: gi|15336881|gb|BI497537.1|BI497537
EST:     GTGTGCAACGGAAGCTGGATATGGTAAATCAG                         GATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
genomic: GTGTGCAACGGAAGCTGGATATGGTAAATCAGgtgagttgtt ... tcttcttaagGATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
EST: gi|6454955|gb|AW185565.1|AW185565
EST:     GTGTGCAACGGAAGCTGGATATGGTAAATCAG                         GATGGAATTAAGAACGAAAAACCCATGGGGACTTCCTAAACCAAA-TATTG
genomic: GTGTGCAACGGAAGCTGGATATGGTAAATCAGgtgagttgtt ... tcttcttaagGATGGAATTAAGAACGAAAAACCAATGAGGACTAC-TAAACCAAAATATCG
EST: gi|298178671|gb|HO024406.1|HO024406
EST:     GTGTGCAACGGAAGCTGGATATGGTAAATCAG                         GATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT
genomic: GTGTGCAACGGAAGCTGGATATGGTAAATCAGgtgagttgtt ... tcttcttaagGATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcctttcttaaatccctctatgcaatgccaacaatttctctgtttcttcttaagGATGGAATTAAGAACGAAAAACCAATGAGGACTACTAAACCAAAATATCGTCAGCCAGGAAAGGACAGCCCAA
                                   tttctctgtttcttct  CT-rich tract
     ttcttaaat  TA-rich tract