Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgttatgaattggattttattaacagatttggacctatttaaggacatcttatatatgttattatcaatgacgattaacttttagGTTTGGAAGAAAGTGGTATATGTTGATAGACTACTCCAGCTCTTCAGATATGTACCCCGTGAACAATTGACCATCCCAGATTTTGTCTTTCA

Basic information

species Glycine max
transcript GLYMA01G06730.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G06730.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os03g05660.1 (Oryza sativa), 3'ss of exon 12
gtgcgttatgaattggattttattaacagatttggacct--atttaaggacatcttatatatgttattatcaatgacgattaactt-------ttagGTTTGGAAGAAAGTGGTATATGTTGATAGACTACTCCAGCTCTTCAGATATGTACCCCGTGAACAATTGACCATCCCAGATTTTGTCTTTCA
  |   |    |||| |      |  |   |||   ||   |||    ||||  ||   | |  || | | |    |       ||       |||||| |||||||||||  | ||||| || |||||  | ||||| |||||||| ||||| ||||||||| |||| || || ||||||||||| ||
--gtacttgctattgcagccatctcgctcgtttcctccccaattctttgacacatttctttttctaattttagcatcttcctttttgtctcaattagGTCTGGAAGAAAGTTATCTATGTCGACAGACTTGTGCAGCTGTTCAGATACGTACCACGTGAACAACTGACAATTCCTGATTTTGTCTTCCA

upper sequence: GLYMA01G06730.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os10g30750.1 (Oryza sativa), 3'ss of exon 12
---gtgcgttatgaattggattttattaacagatttggacctatttaaggacat---cttatatatgttattatcaatgacgatt--aacttttagGTTTGGAAGAAAGTGGTATATGTTGATAGACTACTCCAGCTCTTCAGATATGTACCCCGTGAACAATTGACCATCCCAGATTTTGTCTTTCA
    | | |     |    ||  |  || ||  |||     |   | || |  |    | | || |   ||||||  | |  | |  ||    ||||||||||||||||| || || || ||||| ||  | || || |||||||||||||| || |||||| | || || || ||||||||||||||
gtattacctagctcaacccatactgatatcatcttttatgtttcatcagtatctgtattgagatgtagcattatcttttattaattaaaaaactagGTTTGGAAGAAAGTTGTCTACGTGGATAGGCTTGTGCATCTGTTCAGATATGTACCACGCGAACAACTAACTATTCCTGATTTTGTCTTTCA

upper sequence: GLYMA01G06730.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G100707_T01 (Zea mays), 3'ss of exon 12
gtgcgttatgaattggattttattaacagatttgga-cctatttaaggacatcttatatatgttattatcaatgacgattaactt---ttagGTTTGGAAGAAAGTGGTATATGTTGATAGACTACTCCAGCTCTTCAGATATGTACCCCGTGAACAATTGACCATCCCAGATTTTGTCTTTCA
         | | |  |  ||      | |     | | |  ||   |        |   ||  ||| ||  |   | ||   ||   |||||| ||||||||||| |||||||| || |||||  | ||||| |||||||||||||| ||||||||  | ||||| || |||||||| || ||
---------gtactc-accttgcagctaaaccaaaaacattctttgtgctgctccgtgcttgaaatt-tctgttttggtttgtttcaattagGTCTGGAAGAAAGTTGTATATGTCGACAGACTTGTGCAGCTATTCAGATATGTACCACGTGAACAGCTCACCATTCCTGATTTTGTGTTCCA

upper sequence: GLYMA01G06730.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM5G836588_T01 (Zea mays), 3'ss of exon 12
gtgcgttatgaattggattttattaacagatttggacctatttaaggacatcttatatatgttattatcaatgacgattaacttttagGTTTGGAAGAAAGTGGTATATGTTGATAGACTACTCCAGCTCTTCAGATATGTACCCCGTGAACAATTGACCATCCCAGATTTTGTCTTTCA
                    ||    |   ||  ||| | | |       |  |  ||  | | ||| ||       ||    | ||||| ||||||||||| |||||||| ||||| ||  | ||||| |||||||||||||| || || ||| | || || || || ||||| |||||
-------------------gtacctcctagttcagacatttcttcac-tgtgcttcatgagatcttagcatccttttttcctctatagGTCTGGAAGAAAGTTGTATATGTGGATAGGCTTGTGCAGCTGTTCAGATATGTACCACGCGAGCAACTTACAATTCCTGACTTTGTTTTTCA

upper sequence: GLYMA01G06730.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 3'ss of exon 12
-----------------gtgcgttatgaattggattttattaacagatttg-gac--ctatttaaggacatcttatatatgttattatcaatgacgattaacttttagGTTTGGAAGAAAGTGGTATATGTTGATAGACTACTCCAGCTCTTCAGATATGTACCCCGTGAACAATTGACCATCCCAGATTTTGTCTTTCA
                  | | | |  || || ||| |||    |  | || |||  || ||| |   | | || ||  ||  ||| |   ||   | |    | ||||| |||||||||||||||||||||||  ||||  | ||||| |||||||| || || ||||| || ||||| ||||| || ||||| |||||
gtaagtccaaaagtatcctccttgaccaaatg-attatatcctgacctctgtgacttctgtttgaaagcttattgtaagtgaaattgt---tgggaaatggtctctagGTGTGGAAGAAAGTGGTATATGTTGACCGACTCATGCAGCTGTTCAGATACGTTCCACGTGAGCAGTTGACAATCCCCGACTTTGTGTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggacctatttaaggacatcttatatatgttattatcaatgacgattaacttttagGTTTGGAAGAAAGTGGTATATGTTGATAGACTACTCCAGCTCTTCAGATATGTACCCCGTGAACAATTGACCATCCCAGATTTTGTCTTTCA
                                          gattaac  putative branch site (score: 2)
                                                ctttt  CT-rich tract
                atcttatatatgttat  TA-rich tract