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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattatttcctcttctatatgtcttctagaatgtttcatgccagcgatatatagttaaagatattgttttgaacatatggcttctgattagaattcagattggatatcacaaagtgtaatttgcgtatctcatttcaattcaattatattctttgtaaaaccttgcagTTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAG

Basic information

species Glycine max
transcript GLYMA01G03930.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G03930.1 (Glycine max), 3'ss of exon 14
lower sequence: AT1G17960.1 (Arabidopsis thaliana), 3'ss of exon 7
gtaattatttcctcttctatatgtcttctagaatgtttcatgccagcgatatatagttaaagatattgttttgaacatatggcttctgattagaattcagattggatatcacaaagtgtaatttgcgtatctcatttcaattcaattatattctttgtaaaaccttgcagTTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAG
                                                                                      |   |   | |    |  |||    | |     || ||   ||  ||||   |     ||| ||   | ||        || || | || ||||| || |||||||| || || |||||||||||||| |  || ||||||||   || |||||||||||||||||| ||| | |||
-------------------------------------------------------------------------------------gtatgtgtcactactttctgatgcttctactcaaaactt-tataattcat---agagagattctaaagtgtgatgttttctgaagATAAAGGAAGGAGACGGTGCATTTTATGGCCCAAAGATAGACATAACAGTGTCTGATGCCAGGAATAGGAAATTCCAGTGTGCTACTATACAG

upper sequence: GLYMA01G03930.1 (Glycine max), 3'ss of exon 14
lower sequence: AT5G26830.1 (Arabidopsis thaliana), 3'ss of exon 15
gtaattatttcctcttctatatgtcttctagaatgtttcatgccagcgatatatagttaaagatattgttttgaacatatggcttctgattagaattcagattggatatcacaaagtgtaatttgcgtatctcatttcaattcaattatattctttgtaaaaccttgcagTTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAG
                                                                                            | |||   | | | | |   | | |  | |||    |     | |  ||||| || || | |  |       | ||||||||| ||||| ||||||||||| || || ||||||||||||||||  || ||||||||| ||| |||||||||||||||||| ||||| |||
--------------------------------------------------------------------------------------------gtattgtcacttgttgttgaatactcgagtttattcacaaagtctgcattca-ttctaatgtaagctgt-tttggcagTTGAACGAAGGAGATGGTGCATTTTATGGTCCAAAGATAGACATCACAGTTTCTGATGCAATGAATAGGAAATTCCAGTGTGCTACTTTACAG

upper sequence: GLYMA01G03930.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv01s0026g00340.t01 (Vitis vinifera), 3'ss of exon 15
gtaattatttcctcttctatatgtcttctagaatgtttcatgccagcgatatatagttaaagatattgttttgaacatatggcttctgattagaattcagattggatatcacaaagtgtaatttgcgtatctcatttcaattcaattatattctttgtaaaaccttgcagTTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAG
                                                                                          ||  |||   ||    ||||     ||   ||||   ||| | || |    |   ||||  |||  || |  |  | ||| | ||||||||||||||||| || || ||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| || |||
-----------------------------------------------------------------------------------------gtaatattgcaataaattatcct---gtaccatttctatatttgatgttctcttgcttattatctgagtcatgctgtacagATAAATGAAGGGGATGGTGCCTTTTATGGACCAAAGATAGACATTAGTGTTTCTGATGCATTAAGTAGGAAATTCCAGTGTGCAACATTACAG

upper sequence: GLYMA01G03930.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv19s0015g00470.t01 (Vitis vinifera), 3'ss of exon 15
gtaattatttcctcttctatatgtcttctagaatgtttcatgccagcgatatatagttaaagatattgttttgaacatatggcttctgattagaattcagattggatatcacaaagtgtaatttgcgt-atctcatttcaattcaattatattctttgtaaaaccttgcagTTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAG
                                                                                          ||   ||   ||    || |    |  ||  | |   | |  |  | |    ||  ||||  | |  || |  |  | ||| | ||||||||||| |||||||| || ||||||||||| ||||| ||||| ||||||||||| | ||||||||||||||||||||| || |||
-----------------------------------------------------------------------------------------gtaactttgcaataaattaccctgtaccgttctatatttgaagttctcttgcctc--ttattatttgagtcatgctatacagATAAATGAAGGGGACGGTGCATTTTATGGACCAAAGATTGACATTAGTGTTTCTGATGCATTAAATAGGAAATTCCAGTGTGCAACATTACAG

upper sequence: GLYMA01G03930.1 (Glycine max), 3'ss of exon 14
lower sequence: PP1S400_36V6.1 (Physcomitrella patens), 3'ss of exon 15
gtaattatttcctcttctatatgtcttctagaatgtttcatgccagcgatatatagttaaagatattgttttgaacatatggcttctgattagaattcagattggatatcacaaagtgtaatttgcgtatctcatttcaattcaattatattctttgtaaaaccttgcagTTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAG
                              || | ||||  ||  |       |  |||  ||| | | || ||  |  | |  |   ||||| ||   ||||| |  |    | || | | |||    | |    |  || |  | |     ||  | ||    ||||| | ||||||| ||||||||| || || ||||||||||| |||||||  || | |||||||||||  || || || |||||||| ||  | |||
----------------------------gtgagtatttcg-gctgg-------tctttagcgatgtagattggagaacgttgggt--aattagcat---gattgaaagt----acgtctgagttg---gtttgcgatggatcccctgaatcggttaatcaatgtgtgcagATTAATGAAGCGGATGGTGCCTTTTATGGACCAAAGATTGACATCACCGTTTTTGATGCATTGAAGAGAAAGTTTCAGTGTGCTACAATCCAG

upper sequence: GLYMA01G03930.1 (Glycine max), 3'ss of exon 14
lower sequence: EFJ07136 (Selaginella moellendorffii), 3'ss of exon 16
gtaattatttcctcttctatatgtcttctagaatgtttcatgccagcgatatatagttaaagatattgttttgaacatatggcttctgattagaattcagattggatatcacaaagtgtaatttgcgtatctcatttcaattcaattatattctttgtaaaacctt--gcagTTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAG
                                                                                                                   || | || |     |    ||||| |  || ||      | ||||    ||  |||| |||| ||||| |||||||| || ||||| || ||||| ||||||   |||||||||||| |||  ||||| |||||||| |||||  | |||
-------------------------------------------------------------------------------------------------------------------gtttgatatctcctttctgtttca-tgtaaataccgagctcgtaatcttttctgcagATGAACGAAGGAGATGGTGCCTTTTACGGGCCTAAGATTGACATCCAAGTATCTGATGCACTGAACAGGAAGTTCCAGTGCGCAACAATTCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6566760|gb|AW234392.1|AW234392
EST:     CTGAAAGTGCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAG                         TTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTA
genomic: CTGAAAGTGCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAGgtaattattt ... aaccttgcagTTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTA
EST: gi|10237509|gb|BE806397.1|BE806397
EST:     CTGAAAGTGCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAG                         TTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTA
genomic: CTGAAAGTGCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAGgtaattattt ... aaccttgcagTTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTA
EST: gi|24136706|gb|BU927216.1|BU927216
EST:     CTGAAAGTGCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAG                         TTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTA
genomic: CTGAAAGTGCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAGgtaattattt ... aaccttgcagTTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTA
EST: gi|151406807|gb|EV276622.1|EV276622
EST:     CTGAAAGTGCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAG                         TTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTA
genomic: CTGAAAGTGCTCTTAAAGAAGCTTTAGATGATTTTGGCAAGCCTTGGCAGgtaattattt ... aaccttgcagTTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgtaatttgcgtatctcatttcaattcaattatattctttgtaaaaccttgcagTTGAATGAAGGGGATGGTGCATTCTACGGACCAAAGATAGACATCAGTGTATCTGATGCATTGAGTAGGAAATTCCAGTGTGCAACTTTGCAG
                  atttcaattcaattat  TA-rich tract