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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagccacactacaagattcttatatggtatcaatcactgattgccacttgcttgagttgacagaagagaatacagaggaacatgttccaagttaaaatgcagaattctcatttaaatatcttttttttttcagGTGATCTCAAGCGAATTTGTGAAACTGACCTTGGCTTAATTTCACAATGCTGTCTGACAAAGCATGTCTTCAAAATCACTAAACAGTACCTGGCTAATGT

Basic information

species Glycine max
transcript GLYMA20G28970.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G28970.1 (Glycine max), 3'ss of exon 13
lower sequence: AT5G43810.2 (Arabidopsis thaliana), 3'ss of exon 12
gtaagccacactacaagattcttatatggtatcaatcactgattgccacttgcttgagttgacagaagagaatacagaggaacatgttccaagttaaaatgcagaattctcatttaaatatcttttttt-tttcagGTGATCTCAAGCGAATTTGTGAAACTGACCTTGGCTTAATTTCACAATGCTGTCTGACAAAGCATGTCTTCAAAATCACTAAACAGTACCTGGCTAATGT
                                                 ||  ||       || ||    |  |       | | ||   ||| |   |   ||  |   |   |||| | | || |  | ||||||||||| ||| |||| |||||||| || ||||| || || || ||||| ||||| ||||| ||||| ||||| || |  |||||||| ||||| |||||
----------------------------------------------gtattatttcgacatccataaacttaacccttttgccttcttt--agtaatggttttga--tgaaaacgaaatgtttcttgtaatctcagGTGATCTTAAGAGAATCTGTGAAACCGAGCTTGGTTTGATATCTCAATGTTGTCTCACAAAACATGTGTTCAAGATTAGCAAACAGTATCTGGCAAATGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7283776|gb|AW596379.1|AW596379
EST:     ATTGGAGCTTTTGTTAGCAATATTGCCAGACAATAATGGGTCTCTCTATG                         GTGATCTCAAGCGAATTTGTGAAACTGACCTTGGCTTAATTTCACAATGCT
genomic: ATTGGAGCTTTTGTTAGCAATATTGCCAGACAATAATGGGTCTCTCTATGgtaagccaca ... tttttttcagGTGATCTCAAGCGAATTTGTGAAACTGACCTTGGCTTAATTTCACAATGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacatgttccaagttaaaatgcagaattctcatttaaatatcttttttttttcagGTGATCTCAAGCGAATTTGTGAAACTGACCTTGGCTTAATTTCACAATGCTGTCTGACAAAGCATGTCTTCAAAATCACTAAACAGTACCTGGCTAATGT
                                      tatcttttttttttc  CT-rich tract
                      agaattctcatttaaa  TA-rich tract