Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgttctgtctgttgatgactactttgttagagttgattttatacaatctgtatgtatgatgatttgttgtctgaaaatagttttagcaatatgtttgtgcttagtcttttgttgaagaaaggtggcatgtgccttgtctccctggttatgatcaatatttacatagatttacataatggatatggcaatatgcagAGATTAATATTTGAAGAGCCTGAAGATGGAGTTAGAAAAATAGTGCTAACAACAAATATTGCTGAAACGAGTATCACGATAAATGATGTTGTTTTTGTTC

Basic information

species Glycine max
transcript GLYMA20G25800.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G25800.1 (Glycine max), 3'ss of exon 13
lower sequence: AT2G01130.1 (Arabidopsis thaliana), 3'ss of exon 10
gtaatgttctgtctgttgatgactactttgttagagttgattttatacaatctgtatgtatgatgatttgttgtctgaaaatagttttagcaatatgtttgtgcttagtcttttgttgaagaaaggtggcatgtgccttgtctccctggttatgatcaatatttacatagatttacataatggatatggcaatatgcagAGATTAATATTTGAAGAGCCTGAAGATGGAGTTAGAAAAATAGTGCTAACAACAAATATTGCTGAAACGAGTATCACGATAAATGATGTTGTTTTTGTTC
                                                                                     |||       | ||    ||  ||  ||||   |  | |    | || ||    |   || |  |||| || ||      | | || ||  ||  ||  ||       |||||||| |||||||||||||| |||| |  |||||| ||||| ||||| ||| | || ||||| || |||||||| |||||||| |||||||||| ||||||  
-------------------------------------------------------------------------------------tttcttctctttttccctctccgttctttgc-aaccagaacctgtatttgaaa-gataccatatttatcattaac-----cgttgactt-tattttgagtaa------atgcagAGGTTAATATTTGAAGAACCTGCAAGTGGAGTAAGAAAGATAGTCCTAGCCACTAATATCGCAGAAACGAGCATCACGATCAATGATGTTGCTTTTGTCA

upper sequence: GLYMA20G25800.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv01s0011g04360.t01 (Vitis vinifera), 3'ss of exon 10
gtaatgttctgtctgttgatgactactttgttagagttgattttatacaatctgtatgtatgatgatttgttgtctgaaaatagttttagcaatatgtttgtgcttagtcttttgttgaagaaaggtggcatgtgccttgtctccctggttatgatcaatatttacatagatttacataatggatatggcaatatgcagAGATTAATATTTGAAGAGCCTGAAGATGGAGTTAGAAAAATAGTGCTAACAACAAATATTGCTGAAACGAGTATCACGATAAATGATGTTGTTTTTGTTC
                                                                                     | || |   || ||| |   || ||  |       ||    ||  ||  | ||  | |     |     |||| | |   || |  |||  ||   | ||        |||||| | ||||||||||| ||||||  |||||| || || |||||||||||| | || ||||||||||| || |||||||| || |||||||| ||||||||| 
-------------------------------------------------------------------------------------tctaactgcattttttta--taatccat-----gtgaggattgaaatcagtctcatatattatgcctctatcagt-tcctcaaaagtttttatttggaattc------atgcagCGGTTAATATTTGATGAGCCTCGAGATGGGGTAAGGAAAATAGTGCTAGCCACGAATATTGCTGAGACAAGTATCACAATTAATGATGTGGTTTTTGTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctggttatgatcaatatttacatagatttacataatggatatggcaatatgcagAGATTAATATTTGAAGAGCCTGAAGATGGAGTTAGAAAAATAGTGCTAACAACAAATATTGCTGAAACGAGTATCACGATAAATGATGTTGTTTTTGTTC
          atcaatatttacatag  TA-rich tract