Sequence
atgc intronic sequence ATGC exonic sequencegtatgttacttgctcgttaagcatatagcataaatgttcaagtacatatttgaagaaagtcagtactttgaatcatatgttgtagATAAACGGAATTGAGACTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGT
Basic information
species | Glycine max |
transcript | GLYMA20G25100.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv00s0581g00010.t01 (Vitis vinifera), 3'ss of exon 3
----------------------------------------------------------------------------------------------gtatgttacttgctcgttaagcatatagcataaatgttcaagtacatatttgaagaaagtcagtactttg-aatcatatg-ttgtagATAAACGGAATTGAGACTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGT
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gtatgttcattgaaagtgtataattttcttttattttgtttttaattaaatctgtgttgtggatggactattattggatcagatttatctgaaatttcagtggtaacaaactttgagttttagattggtgtctgaacactcatgggaagaatttttttcctctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAATTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAAT
upper sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv00s0449g00010.t01 (Vitis vinifera), 3'ss of exon 6
----------------------------------------------------------------------------------------------gtatgttacttgctcgttaagcatatagcataaatgttcaagtacatatttgaagaaagtcagtactttg-aatcatatg-ttgtagATAAACGGAATTGAGACTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGT
| | | | | | | | || ||| | || || |||||| | | || | ||| || || |||||||| || |||||| | || ||||||||||||| ||||| |||||||| |||| |||||| | || ||||| | ||||||||||||||||||||| |
gtatgttcattgaaagtgtataattttcttttattttgtttttaattaaatctgtgttgtggatggactattattggatcagatttatctgaaatttcagtggtaacaaactttgagttttagattggtgtctgaacactcatgggaagaatttttttcctctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAATTTGGAAAGTTTCTGGAAGAGCTGGCATGCTTCCTTCAACAAAT
upper sequence: GLYMA20G25100.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv00s0507g00020.t01 (Vitis vinifera), 3'ss of exon 6
--------------------------------------------------------------------------------------gtatgttacttgctcgttaagca---------tatagcataaatgttcaagtacatatttgaagaaagtcagtactttg-aatcatatg-ttgtagATAAACGGAATTGAGACTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGT
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gtatgttcattgaaagcgtataattttcttttattttgtttctaattaaatctgtgttgtggatggactattatttgaccatatatatctgaaatttcagtggtaacaaacttttagttttagaattggtgtctgaacactcatgggaagaatttttttcttctataattatgtgattgtagATTTGTGGCATTGAGGCCCCTGAGAATATGCCAAGGTGTATCAATAATTGCTACAACTTGGAAAGTTTCTGGAAGAACTGGCATGCTTCCTTCAACAAATMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208093647|gb|GD892294.1|GD892294EST: GTGGCTAAAATTTTTACTGATCTGGCGCTTTTTTCCGTTTCTGGTCACTG ATAAACGGAATTGAGGCTCCAGAGAATATGCCAAAATGTATTAATAATTGT
genomic: GTGGCTAAAATTTTTACTGATCTGGCGC-TTTTTCCGCTTCTGGTCACTGgtatgttact ... tatgttgtagATAAACGGAATTGAGACTCCAGAGAATATGCCAAAATGTATTAATAATTGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaatgttcaagtacatatttgaagaaagtcagtactttgaatcatatgttgtagATAAACGGAATTGAGACTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGT
tacatattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgttacttgctcgttaagcatatagcataaatgttcaagtacatatttgaagaaagtcagtactttgaatcatatgttgtagATAAACGGAATTGAGACTCCAGAGAATATGCCAAAATGTATTAATAATTGTCACAACTTGGAAGGCTTTTGGAAAAACTGGCATGCTTCCTTCAACAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG