Sequence
atgc intronic sequence ATGC exonic sequencegtaataactattctctttgagaacttctaatatcttttcaaatacacatggattcacatactgacatacatatgtttgttctatctatatatattgtgttctttggcaagataactagattgtattatgttgcattcttacagGGGTTAATAACATTTCTGGTTAATGAGAATGGTTTCAACAGTGATAGAGTGACTAAG
Basic information
species | Glycine max |
transcript | GLYMA20G22190.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G22190.2 (Glycine max), 3'ss of exon 13
lower sequence: Vv14s0060g00210.t01 (Vitis vinifera), 3'ss of exon 13
gtaataactattctctttgagaacttctaatatcttttcaaatacacatggattcacatactgacatacatatgtttgttctatctatatatattgtgttctttggcaagata-actagattgtattatgttgcattcttacagGGGTTAATAACATTTCTGGTTAATGAGAATGGTTTCAACAGTGATAGAGTGACTAAG
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-------------------------------------------gtaaatgatttta---gttggaaaa------tttgtattgtcttt---tgttttttttttgggcatgttacaagtgtttttgttgtctctcacatttttagGGGTTGATAACCTTTCTGGTGAATGAAAATGGATTCAACAGTGACAGAGTAACAAAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|208176949|gb|GD976020.1|GD976020EST: TAACTGATGAAAAGGAACTTGATATTAAGTGGTCTTCTCCAGATGAAGAA GGGTTAATAACATTTCTGGTTAATGAGAATGGTTTCAACAGTGATAGAGTG
genomic: TAACTGATGAAAAGGAACTTGATATTAAGTGGTCTTCTCCAGATGAAGAAgtaataacta ... attcttacagGGGTTAATAACATTTCTGGTTAATGAGAATGGTTTCAACAGTGATAGAGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atatattgtgttctttggcaagataactagattgtattatgttgcattcttacagGGGTTAATAACATTTCTGGTTAATGAGAATGGTTTCAACAGTGATAGAGTGACTAAG
agataac putative branch site (score: 3)
cattctt putative PPT
attgtattat TA-rich tract