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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttacatgagttacacatacatatttcaataattgtattattctagtaattaataaacactgcctttaatcctactgaatgttgtcattgtaactttgcagTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATATGATAATATGGGTTCTAGGGTTGATTATGATGCCCCAGGTCATTGGTGTACTA

Basic information

species Glycine max
transcript GLYMA19G41840.3
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41840.2 (Glycine max), 3'ss of exon 13
lower sequence: AT5G27030.2 (Arabidopsis thaliana), 3'ss of exon 12
--------------------------------------------------------------ttacatgagttacaca-tacatatttcaataattgtattattctagtaattaataaacactgcctttaatcctactgaatgttgtcattgta-actttgcagTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATATGATAATATGGGTTCTAGGGTTGATTATGATGCCCCAGGTCATTGGTGTACTA
|| | || | | | || | || | | || |||| | | || || ||| || | | | | || | || || | || ||||| |||||||||| ||||| ||||| ||||||||||||||| | ||||||||| ||||||| || ||||| |||||||| || ||| | |||||||| |
gtgcggcaaggattgaatcaaactatattttacatcaattattatactgttttaccaatccgtttgaagaacaataaagtagacgacacatttcatatagtattatcttgcctatgaatttctgttctttaccaaaatacatctcgttcttatttggatttcagTTCATATTTTCAACCGCCATAGATGGGAAAATAAAAGCCTGGCTTTATGATAATCTGGGTTCCAGAGTTGACTATGATGCTCCCGGTAAATGGTGTACGA

upper sequence: GLYMA19G41840.2 (Glycine max), 3'ss of exon 13
lower sequence: Vv14s0060g01680.t01 (Vitis vinifera), 3'ss of exon 13
--ttacatgagttacacatacatatttcaataattgtattattctagtaattaataaacactgcctttaatcctactgaatgttgtcattgtaa-ctttgcagTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATATGATAATATGGGTTCTAGGGTTGATTATGATGCCCCAGGTCATTGGTGTACTA
| |||| || | || ||| || || ||| | ||| || || | || || |||| || || | |||| ||||||||| ||||||||||||| || ||||| ||||| ||||||||||| ||||| || || || || || ||||| |||||||| || || | ||||| ||||
gaagatatgatttcta-attgggatt--aaggttttgtttagttgagttatagttacagacattctctaatgatatgttgctttccactcgtaaattttgcagTTCATATTTTCAACTGCTATGGATGGGAAAATTAAAGCCTGGTTGTATGACAACATTGGGTCCAGAGTTGACTATGATGCTCCTGGGCTATGGTGCACTA

upper sequence: GLYMA19G41840.2 (Glycine max), 3'ss of exon 13
lower sequence: PP1S99_260V6.1 (Physcomitrella patens), 3'ss of exon 13
ttacatgagttacacatacat-atttcaataattgtattattctagtaattaataaacactgcctt---taatcctactgaatgttgt-cattgtaactttgcagTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATATGATAATATGGGTTCTAGGGTTGATTATGATGCCCCAGGTCATTGGTGTACTA
| || || | || | ||| ||| | | |||| | ||| | || | ||| | |||| ||| | | |||||| |||| ||||| || || |||||||| |||||||||||| | |||||| | | |||||||| ||||| |||||||| ||||| |||||||| ||||
-----ttagccccatgtgaattaaaacaaaaatggagtaattcgtatctgaaatgtgcggtgtggtgtgtaaaacctctgacctttggatgacctcgtatgccagTTTATATTCTCAACAGCTATCGATGGCAAGATAAAAGCCTGGCTCTATGATCTTCTTGGTTCTAGAGTTGACTATGATGCACCAGGGCATTGGTGCACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattaataaacactgcctttaatcctactgaatgttgtcattgtaactttgcagTTTGTATTTTCAACTGCCATTGATGGCAAAATAAAAGCCTGGTTATATGATAATATGGGTTCTAGGGTTGATTATGATGCCCCAGGTCATTGGTGTACTA
                                         ttgtaac  putative branch site (score: 2)
 aataaaca  TA-rich tract