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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaaacttataatttttgtgagggtacaactacaagttcacaagttttctatagatctgacattgcttttataattttgtttgtgattcagTTGGGAGACATTTCAGCCTGTGGGGGGTTTACTTCCTCAGCCAGAATGGACTGCTTGGGACCAAACCGTCGAGTACTGTGCATTTGCATACCAGCAATAT

Basic information

species Glycine max
transcript GLYMA19G41130.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G41130.2 (Glycine max), 3'ss of exon 9
lower sequence: AT5G24710.1 (Arabidopsis thaliana), 3'ss of exon 13
gtgaaact-ta-taatttttgtgagggtacaactacaagttcacaagttttctatag-atctgacattgcttttat---aattttgtttgtgattc--agTTGGGAGACATTTCAGCCTGTGGGGGGTTTACTTCCTCAGCCAGAATGGACTGCTTGGGACCAAACCGTCGAGTACTGTGCATTTGCATACCAGCAATAT
   || || || | |||    |     |       | || ||  |  || | |  || || | |  |  || ||||   |||    ||| | ||    |||||||| |  ||| |||| || || ||| | || ||||||||||||||||| || ||||||||||| || || |||||||| ||||| || || ||||| 
accaatctgtactgattcccatagttatgttttggctagctctaattttgtttgaaggatttcagttctctattatctaaatggaatttttaatgtgtagTTGGGAAAATTTTGAGCCAGTAGGTGGTATGCTACCTCAGCCAGAATGGACGGCATGGGACCAAACAGTTGAATACTGTGCTTTTGCTTATCAACAATAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcacaagttttctatagatctgacattgcttttataattttgtttgtgattcagTTGGGAGACATTTCAGCCTGTGGGGGGTTTACTTCCTCAGCCAGAATGGACTGCTTGGGACCAAACCGTCGAGTACTGTGCATTTGCATACCAGCAATAT
                  atctgac  putative branch site (score: 3)
                                      ttttgttt  putative PPT
                              ttttataattttgttt  TA-rich tract