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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcagcctgcttttccagctttctgtgttgtgaaatatctattgttgataacatgctattttggacctctgatctccatctttctagGGTCCTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATGTCTCACTTTACTCCATAGCAAAAAAATGTCCACCAAACTTCACTGGTGCAGACATG

Basic information

species Glycine max
transcript GLYMA19G39580.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G39580.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv07s0104g01610.t01 (Vitis vinifera), 3'ss of exon 13
gtaagcagcctgcttttccagctttctgtgttgtga--aatatctattgttgataacatgctatt-ttggac--ctctgatctccatct-ttctagGGTCCTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATGTCTCACTTTACTCCATAGCAAAAAAATGTCCACCAAACTTCACTGGTGCAGACATG
|| ||   |||     |   |||||| | |||||    |  |  |  | ||||||  |  |  || |||||   | |   |  |||  | ||  |||||||| ||||| |||||||||||||| |  |||||||||||||| || |||||||| ||||| || |||||||| |||||||| |||||||||||||||
gttagtgcccttaacatttggctttcag-gttgtagttaggacattctattgatacgacacacttattggatgtccccatttcccacatgttgcagGGTCCTCAAAGCACTTACCCGAAAGTTTATGTTGCATGAAGATGTATCGCTTTACTCAATAGCCAAGAAATGTCCCCCAAACTTTACTGGTGCAGACATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209717880|gb|BW666071.1|BW666071
EST:     GACAAACTGCTATATGTCGGAGTTAACTCCGATGCATCTTACAGGGAGCG                         GGTCCTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATGTCTCACT
genomic: GACAAACTGCTATATGTCGGAGTTAACTCCGATGCATCTTACAGGGAGCGgtaagcagcc ... atctttctagGGTCCTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATGTCTCACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatatctattgttgataacatgctattttggacctctgatctccatctttctagGGTCCTGAAAGCTCTTACCCGAAAGTTCAAATTGCATGAAGATGTCTCACTTTACTCCATAGCAAAAAAATGTCCACCAAACTTCACTGGTGCAGACATG
                                        tctccatctttct  CT-rich tract
                        tatttt  TA-rich tract