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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcctcatgagttatattgaagagttcatgcatgctatttgtgcagatgccaattttaagatatctatgtttattttctgctttctgccaactgtgtacagGTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCCCCATTACTTGGGTTCAAATACTTGCAGCCAC

Basic information

species Glycine max
transcript GLYMA19G37310.2
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA19G37310.3 (Glycine max), 3'ss of exon 13
lower sequence: AT3G53090.1 (Arabidopsis thaliana), 3'ss of exon 11
---------------------gcctcatgagt-tatattgaagagttcatgcatgcta-tttgtg-cagatgccaat--tttaagatatctatgtttattttctgctttctgccaactgtgtacagGTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCCCCATTACTTGGGTTCAAATACTTGCAGCCAC
                      ||| ||   |   | ||       |  ||  ||| | ||| || || ||||  |   ||| ||       ||| || ||||| || |  ||   |||| | ||||| || |||||||||||||| |  || || ||  |||| || |||||||| || ||||||||||| || ||| | ||||| |||||||||||||||||| 
gtaataactcttaatcagaagtcctgatctctacgttttctttctattctgtttgccaatttatgacatatgctgagagtttgagtgcggcttgtataatttct-ctctgggcatcctgtct-cagGTCATGAAAGGCTTTGAACCGAGTGAACGTTGCTTGCTCCTCAAATTTGTGACTAGTTGTTCTCGGGCACCACTCCTTGGTTTCAAATACTTGCAGCCAA

upper sequence: GLYMA19G37310.3 (Glycine max), 3'ss of exon 13
lower sequence: Vv08s0007g04290.t01 (Vitis vinifera), 3'ss of exon 11
gcctcatgagttatattgaagagttcatgcatgctatttgtgcagatgccaattttaagatatct-atgtttattttctgctt--tctgccaactgtgt-acagGTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCCCCATTACTTGGGTTCAAATACTTGCAGCCAC
 |||  |||   ||||       || | |    |   || |  |  ||   | | ||| |||| | |||||| | ||   |||  ||||   | | ||| |||||| |||| ||| |||||||| ||||| ||||||||||||||||||||||| || ||||||||||| || ||||||||||| || ||| || |||||||| 
-ccttctgaaccatatatcctgattgagg---acaccttctaaaactggttagtgtaatatattttatgtttctattgaacttgttctgattattatgtcacagGTCATTACAGGTTTTGAACCAAAAGAACGCTGTATGCTTCTTAAATTTGTGACAAGTTGTTCTCGAGCTCCATTACTTGGATTTAAACACCTGCAGCCAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151407290|gb|EV277105.1|EV277105
EST:     ACACTGGTGGTTACAGTGAGGGAAGCCGCCCAATCAAGATTTTTTGGGAG                         GTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTC
genomic: ACACTGGTGGTTACAATGAGGGAAGCCGCCCAATCAAGATTTTTTGGGAGgtatttgtat ... ctgtgtacagGTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgccaattttaagatatctatgtttattttctgctttctgccaactgtgtacagGTAATTAAAGGCTTTGAACCTAAAGAGCGCTGTATGCTTCTTAAATTTGTCACCAGTTGTTCTCGTGCCCCATTACTTGGGTTCAAATACTTGCAGCCAC
     aattttaagatatcta  TA-rich tract