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gttttatgatctctatcaaacacctctgttttattagttattggcatatccatttgtatggaatctattttgtggacactttacagGCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGCCTCTTGGCAGCCCTAGCTGAAGCTGGCTTCCTAATTGGACTGGAAAAGA
species | Glycine max |
transcript | GLYMA19G30450.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TGTTTTATAGAGCTAACACATTTGATCATACATCACGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGCEST: gi|33390367|gb|CA853562.1|CA853562
genomic: TGTTTTCTAGAGCTAACACATTTGATCATACATCACGAAATGGTCCAAAGgttttatgat ... cactttacagGCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: TGTTTTCTAGAGCTAACACATTTGATCATACATCACGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGCEST: gi|22523685|gb|BU082496.1|BU082496
genomic: TGTTTTCTAGAGCTAACACATTTGATCATACATCACGAAATGGTCCAAAGgttttatgat ... cactttacagGCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: TGTTTTCTAGAGCTAATGCATTTGATCATACATCTCGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCTGTGACTGGAAAAGATGCTGGGACAGGAAGCEST: gi|21888837|gb|BQ742050.1|BQ742050
genomic: TGTTTTCTAGAGCTAACACATTTGATCATACATCACGAAATGGTCCAAAGgttttatgat ... cactttacagGCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: ATTTGATCATACATCACGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGCEST: gi|4291961|gb|AI437694.1|AI437694
genomic: ATTTGATCATACATCACGAAATGGTCCAAAGgttttatgat ... cactttacagGCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: TGTTTTCTAGAGCTAACACATTTGATCATACATCACGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGCEST: gi|13181153|gb|BG352493.1|BG352493
genomic: TGTTTTCTAGAGCTAACACATTTGATCATACATCACGAAATGGTCCAAAGgttttatgat ... cactttacagGCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGC
EST: TGTTTTCTAGAGCTAACACATTTGAT-ATACATCACGAAATGGTCCAAAG GCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGC
genomic: TGTTTTCTAGAGCTAACACATTTGATCATACATCACGAAATGGTCCAAAGgttttatgat ... cactttacagGCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGC
tattagttattggcatatccatttgtatggaatctattttgtggacactttacagGCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGCCTCTTGGCAGCCCTAGCTGAAGCTGGCTTCCTAATTGGACTGGAAAAGA
aatctatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttatgatctctatcaaacacctctgttttattagttattggcatatccatttgtatggaatctattttgtggacactttacagGCTTTTGTAAGTGAGTATGCCGTGACTGGAAAAGATGCTGGGACAGGAAGCCTCTTGGCAGCCCTAGCTGAAGCTGGCTTCCTAATTGGACTGGAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG