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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagttaagatgattgttttaaatgcctagtagctgttggataggtatgtatgtggtgtttgtttaatctttattccgttctcacttctcagGTCACCTTAACTGCCTTAGAGGAGATGTTTCAAGGTGCACGAGGTATCATGAGCTGGCTTGGTGACTGTGCAAAA

Basic information

species Glycine max
transcript GLYMA18G51160.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G51160.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv14s0083g00790.t01 (Vitis vinifera), 3'ss of exon 13
--------------------------------------gtttgagttaagatgat-tgtttt---------aaatgcctagtagctg---ttggataggtatgtatgtggtgtttgtttaatctttat------tccgttctcacttctc-----agGTCACCTTAACTGCCTTAGAGGAGATGTTTCAAGGTGCACGAGGTATCATGAGCTGGCTTGGTGACTGTGCAAAA
                                        ||  | ||| ||| | |  |           |||  |  ||| |  |   ||  |  |  |  |        ||| ||| || ||| |      |  ||  ||  || |      || | || ||||||||  | | ||| |||||||||| ||| ||  ||||||||||||||||||||||||||||||| 
gtaatggcagtaggaatgttagtaatggagcctcatttcattttgctaaaatgttgtactcctcatggaagaaactctcagtggaagaacttacactgacacatgaagatcttttctttcatttttgtgacaagtttgtgttctattgtttgagtagATTACTTTAACTGCTCTGGGGGAAATGTTTCAAGCTGCTCGCAGTATCATGAGCTGGCTTGGTGACTGTGCAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggataggtatgtatgtggtgtttgtttaatctttattccgttctcacttctcagGTCACCTTAACTGCCTTAGAGGAGATGTTTCAAGGTGCACGAGGTATCATGAGCTGGCTTGGTGACTGTGCAAAA
                                         ttctcac  putative branch site (score: 2)
                              tctttattccgttctc  CT-rich tract
                     tttgtttaatctttat  TA-rich tract