1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ttagtaccatgttaaggccaactattccaaaatcttaaacagtaaaggcttatcaacgcttttatatctaacaatcagtgaatctggtttgtgttgaaggTGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAACCCCAACCGTAGGAAGGGCAGGAAGGCACGTGCTGTGAGTCTGGACCACT
species | Glycine max |
transcript | GLYMA18G46610.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATTGGTTTAGAGCAAGGGGAAAACTTTCAGATGATGAAGCCTTGCATAGG TGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAACEST: gi|6848246|gb|AW350536.1|AW350536
genomic: ATTGGTTTAGAGCAAGGGGAAAACTTTCAGATGATGAAGCCTTGCATAGGtacataactt ... gtgttgaaggTGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAAC
EST: TTTCAGATGATGAAGCCTTGCATAGG TGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAACEST: gi|6483253|gb|AW202421.1|AW202421
genomic: TTTCAGATGATGAAGCCTTGCATAGGtacataactt ... gtgttgaaggTGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAAC
EST: ATTGGTTTAGAGCAAGGGGAAAACTTTCAGATGATGAAGCCTTGCATAGG TGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAACEST: gi|8827744|gb|BE211474.1|BE211474
genomic: ATTGGTTTAGAGCAAGGGGAAAACTTTCAGATGATGAAGCCTTGCATAGGtacataactt ... gtgttgaaggTGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAAC
EST: GCAAGGGGAAAACTTTCAGATGATGAAGCCTTGCATAGG TGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAACEST: gi|254319563|gb|GR829075.1|GR829075
genomic: GCAAGGGGAAAACTTTCAGATGATGAAGCCTTGCATAGGtacataactt ... gtgttgaaggTGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAAC
EST: ATTGGTTTAGAGCAAGGGGAAAACTTTCAGATGATGAAGCCTTGCATAGG TGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAACEST: gi|7796354|gb|AW781751.1|AW781751
genomic: ATTGGTTTAGAGCAAGGGGAAAACTTTCAGATGATGAAGCCTTGCATAGGtacataactt ... gtgttgaaggTGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAAC
EST: ATTGGTTTAGAGCAAGGGGAAAACTTTCAGATGATGAAGCCTTGCATAGG TGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAACEST: gi|8286224|gb|BE023783.1|BE023783
genomic: ATTGGTTTAGAGCAAGGGGAAAACTTTCAGATGATGAAGCCTTGCATAGGtacataactt ... gtgttgaaggTGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAAC
EST: ATTGGTTTAGAGCAAGGGGAAAACTTTCAGATGATGAAGCCTTGCATAGG TGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAAC
genomic: ATTGGTTTAGAGCAAGGGGAAAACTTTCAGATGATGAAGCCTTGCATAGGtacataactt ... gtgttgaaggTGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAAC
aggcttatcaacgcttttatatctaacaatcagtgaatctggtttgtgttgaaggTGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAACCCCAACCGTAGGAAGGGCAGGAAGGCACGTGCTGTGAGTCTGGACCACT
atctaac putative branch site (score: 2)
ttttatatctaacaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttagtaccatgttaaggccaactattccaaaatcttaaacagtaaaggcttatcaacgcttttatatctaacaatcagtgaatctggtttgtgttgaaggTGTGTGGTAGCATATACTTCAGATCTAATCTTTCTTCAAGTGAGTTTAAACCCCAACCGTAGGAAGGGCAGGAAGGCACGTGCTGTGAGTCTGGACCACT
- - - ccatgtt
- - - - - - - - -ccaacta
- - - - - - - - - - - - - ccaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctggtt