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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ggtaaagtacacaattgcacacatgttaaaatattgtttacaatcactgactgctacatgctaaaccgttctttctaaatttgttagcttctcactggtatttatcatcttgtgccttgcaGTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA

Basic information

species Glycine max
transcript GLYMA18G43310.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G43310.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G162672_T01 (Zea mays), 3'ss of exon 13
ggtaaagtacacaattgcacacatgttaaaatattgtttacaatcactgactgctacatgctaaaccgttctttctaaatttgttagcttctcactggtatttatcatcttgtgccttgcaGTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA-
       |  ||||     |  | || | |   |||| |    | |||  ||| | |||   | || |    || |   |||||    |     ||  || |||   || ||      ||||||| |||| |||||  ||||||||||||| |||||||| |||||||| 
-------tgaacaacgtagcggaggtaacagggttgtctg---ttact--ctgtttcat-taacactgccacttatgtgtttgtgcatt-----ctaatacttaatttcctgga----gcagTTCCAGTACTTCCTGAAGGACCCTGTGAAGTATGATGTCAAATATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8826413|gb|BE210143.1|BE210143
EST:     TTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCA                         GTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA
genomic: TTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCAggtaaagtac ... gtgccttgcaGTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA
EST: gi|15203846|gb|BI426614.1|BI426614
EST:     TTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCA                         GTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA
genomic: TTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCAggtaaagtac ... gtgccttgcaGTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA
EST: gi|16276277|gb|BI941773.1|BI941773
EST:     TTTTATGCGTTAGCTNTACTTGGCCTAATAATTCCACAGGTCTTTTTTCA                         GTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA
genomic: TTTTATGCGTTAGCTTTACTTGGCCTAATAATTCCACAGGTCTTTTTTCAggtaaagtac ... gtgccttgcaGTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttctttctaaatttgttagcttctcactggtatttatcatcttgtgccttgcaGTTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCA
                      ttctcac  putative branch site (score: 2)
     tttctaaatttgtta  TA-rich tract