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...taggtgttctgtgaaacaatataatgttggtggaattcttattttatgcggggtgcattatttctaaagataaccgctacattgcttaatataattccagGTAAAGGAACGTGCAATCGAACTTGCAAAGGCCATGGAAAATGAGGATGGAGTGACAGGAGCTGTGAAAGCATTTTTTAAGCAGCTTCCTCAAAAAAAAT
species | Glycine max |
transcript | GLYMA18G28130.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTTCACTTCCCAAGTTGGTTGATGCAATAAAACTTATGCTGGATCCCAAG GTAAAGGAACGTGCAATCGAACTTGCAAAGGCCATGGAAAATGAGGATGGAEST: gi|6566103|gb|AW233863.1|AW233863
genomic: TTTCACTTCCCAAGTTGGTTGATGCAATAAAACTTATGCTGGATCCCAAGgtaaaatata ... ataattccagGTAAAGGAACGTGCAATCGAACTTGCAAAGGCCATGGAAAATGAGGATGGA
EST: TTCACTTCCCAAGTTGGTTGATGCAATAAAACTTATGCTGGATCCCAATG GTAA-GGAACGTGCAATCGAACTTGCAAAGGCCATGGAAAATGACGATGGEST: gi|51338437|gb|CO982303.1|CO982303
genomic: TTCACTTCCCAAGTTGGTTGATGCAATAAAACTTATGCTGGATCCCAA-Ggtaaaatata ... ataattccagGTAAAGGAACGTGCAATCGAACTTGCAAAGGCCATGGAAAATGAGGATGG
EST: TTTCACTTCCCAAGTTGGTTGATGCAATAAAACTTATGCTGGATCCCAAG GTAAAGGAACGTGCAATCGAACTTGCAAAGGCCATGGAAAATGAGGATGGAEST: gi|7284777|gb|AW597327.1|AW597327
genomic: TTTCACTTCCCAAGTTGGTTGATGCAATAAAACTTATGCTGGATCCCAAGgtaaaatata ... ataattccagGTAAAGGAACGTGCAATCGAACTTGCAAAGGCCATGGAAAATGAGGATGGA
EST: TGATGCAATAAAACTTATGCTGGATCCCAAG GTAAAGGAACGTGCAATCGAACTTGCAAAGGCCATGGAAAATGAGGATGGAEST: gi|58017155|gb|CX703897.1|CX703897
genomic: TGATGCAATAAAACTTATGCTGGATCCCAAGgtaaaatata ... ataattccagGTAAAGGAACGTGCAATCGAACTTGCAAAGGCCATGGAAAATGAGGATGGA
EST: TTTCACTTCCCAAGTTGGTTGATGCAATAAAACTTATGCTGGATCCCAAG GTAAAGGAACGTGCAATCGAACTTGCAAAGGCCATGGAAAATGAGGATGGA
genomic: TTTCACTTCCCAAGTTGGTTGATGCAATAAAACTTATGCTGGATCCCAAGgtaaaatata ... ataattccagGTAAAGGAACGTGCAATCGAACTTGCAAAGGCCATGGAAAATGAGGATGGA
atgcggggtgcattatttctaaagataaccgctacattgcttaatataattccagGTAAAGGAACGTGCAATCGAACTTGCAAAGGCCATGGAAAATGAGGATGGAGTGACAGGAGCTGTGAAAGCATTTTTTAAGCAGCTTCCTCAAAAAAAAT
attatttctaaagata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggtgttctgtgaaacaatataatgttggtggaattcttattttatgcggggtgcattatttctaaagataaccgctacattgcttaatataattccagGTAAAGGAACGTGCAATCGAACTTGCAAAGGCCATGGAAAATGAGGATGGAGTGACAGGAGCTGTGAAAGCATTTTTTAAGCAGCTTCCTCAAAAAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT