Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tttgtcatttttttttgttttgaagttgcaagtctgtgtagcctaattgccgttacagagtacctcacataataataataagagtggatttgaaagaaattgatatttggttttgctggttttcatttgaattaaccttggaacattttcatccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTG

Basic information

species Glycine max
transcript GLYMA18G08180.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G08180.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv19s0015g01730.t01 (Vitis vinifera), 3'ss of exon 13
tttgtcatttttttttgttttgaagttgcaagtctgtgtagcctaattgccgttacagagtacctcacataataataataagagtggatttgaaagaaattgatatttggttttg-ctggttttcatttgaattaaccttggaacattttcatccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTG
                                               |||  || || | |   | |   | |  | |||          || || ||| | |  ||  | |||| ||| | |  |  |    |||   |  |||  ||   || | ||||||||| ||||||||||| ||||||||||| ||| | ||||||||||| ||||||||||| |||||||| |||||||||||| 
---------------------------------------------tatgcaattgcaaatt--tttatcgattcctgata---------ctgcaaaaaactaagtttaagatttgactgttctgaaccttttctaattgtctaaccatt---tcttcagGGAATTCAGCTGTTCAAGCTATTTCTTTACTGATACAGAAGGGTGTACCAGAGTCCAACATCATATTTCTGAATCTCATATCT-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21602644|gb|BQ612975.1|BQ612975
EST:     GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG                         GAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
genomic: GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGtttgtcattt ... catccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
EST: gi|6951844|gb|AW423912.1|AW423912
EST:     CTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG                         GAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
genomic: CTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGtttgtcattt ... catccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
EST: gi|58019197|gb|CX705939.1|CX705939
EST:     GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG                         GAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGTGTGTACCTGA
genomic: GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGtttgtcattt ... catccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
EST: gi|15286158|gb|BI470049.1|BI470049
EST:     GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG                         GAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
genomic: GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGtttgtcattt ... catccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
EST: gi|58018989|gb|CX705731.1|CX705731
EST:     GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG                         GAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGTGTGTACCTGA
genomic: GATATCTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGtttgtcattt ... catccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
EST: gi|9984937|gb|BE659045.1|BE659045
EST:     CTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGG                         GAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA
genomic: CTCTGATAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGtttgtcattt ... catccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttggttttgctggttttcatttgaattaaccttggaacattttcatccttaggGAATTCGGCTGTTCAAGCAATTTCTTTACTCATAAAAAAGGGTGTACCTGAGTCCAACATTATATTTCTTAATCTCATATCTG
                         aattaac  putative branch site (score: 2)
                                         ttttcatcctt  putative PPT
               ttttcatttgaattaa  TA-rich tract