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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactttgtttgtcatgatttctctagacttgacatttttactcaaaaatctggctgtaatttatgcttattaatattccttttctttgcagGGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG

Basic information

species Glycine max
transcript GLYMA18G01710.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208113070|gb|GD912445.1|GD912445
EST:     TTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAG                         GGTGAATCTCAAACAGGGAAATCACGGTGGCAGG
genomic: TTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAGgtactttgtt ... ttctttgcagGGTGAATCTCAAACAGGGAAATCACGGTGGCAGG
EST: gi|6726342|gb|AW310696.1|AW310696
EST:     TTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAG                         GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
genomic: TTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAGgtactttgtt ... ttctttgcagGGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
EST: gi|19348792|gb|BM893324.1|BM893324
EST:     TTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAG                         GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
genomic: TTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAGgtactttgtt ... ttctttgcagGGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
EST: gi|192319062|gb|FK010626.1|FK010626
EST:     TTGATTCTCAGTGGATTGTTCACTAAGGTCTTCCCTCACTAGGGAATCAG                         GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
genomic: TTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAGgtactttgtt ... ttctttgcagGGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
EST: gi|208125922|gb|GD925978.1|GD925978
EST:     TGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAG                         GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
genomic: TGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAGgtactttgtt ... ttctttgcagGGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
EST: gi|254315636|gb|GR825445.1|GR825445
EST:     TTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAG                         GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
genomic: TTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAGgtactttgtt ... ttctttgcagGGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
EST: gi|254347136|gb|GR856806.1|GR856806
EST:     TTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAG                         GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
genomic: TTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAGgtactttgtt ... ttctttgcagGGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
EST: gi|193385504|gb|FK349858.1|FK349858
EST:     TTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAG                         GGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
genomic: TTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAGgtactttgtt ... ttctttgcagGGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
EST: gi|192302164|gb|FG995816.1|FG995816
EST:     TTGATTTTCAGTGGATTGTTCACCAAGGTTTTCCCTCACTAGGGAATCAG                         GGTGAATTTCAAACAGGGAAATCACGGTGGCAGGGG
genomic: TTGATTCTCAGTGGATTGTTCACCAAGGTCTTCCCTCACTAGGGAATCAGgtactttgtt ... ttctttgcagGGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttactcaaaaatctggctgtaatttatgcttattaatattccttttctttgcagGGTGAATCTCAAACAGGGAAATCACGGTGGCAGGGG
                               tattaat  putative branch site (score: 2)
                                     tattccttttctttgc  CT-rich tract
                    taatttatgcttatta  TA-rich tract