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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tgtgagtctgaacttttctatcatgtttaatcatgtgtgactacttgtttggaggattagaaagagaatgaccaaatctttcattgtattgcaGGTCTCTGCAACTGGAATGTCTTTTAGTCTCTTAGTTGTTGCAATCACATTCTACATAAA

Basic information

species Glycine max
transcript GLYMA17G36950.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401778|gb|EV271591.1|EV271591
EST:     AGTCTAACTTTGTGGCTGGCAGACAAATCTGGTCGTCGGCTTCTCCTTAT                         TGTCTCTGCAACTGGAATGTCTTTTAGTCTCTTAGTTGTTGCAATCACATT
genomic: AGTCTAACTTTGTGGCTGGCAGACAAATCTGGTCGCCGGCTTCTCCTTATtgtgagtctg ... ttgtattgcaGGTCTCTGCAACTGGAATGTCTTTTAGTCTCTTAGTTGTTGCAATCACATT
EST: gi|21677651|gb|BQ630002.1|BQ630002
EST:     AGTCTAACTTTGTGGCTGGCAGACAAATCTGGTCGCCGGCTTCTCCTTAT                         TGTCTCTGCAACTGGAATGTCTTTTA
genomic: AGTCTAACTTTGTGGCTGGCAGACAAATCTGGTCGCCGGCTTCTCCTTATtgtgagtctg ... ttgtattgcaGGTCTCTGCAACTGGAATGTCTTTTA
EST: gi|4396935|gb|AI495932.1|AI495932
EST:     AGTCTAACTTTGTGGCTGGCAGACAAATCTGGTCGCCGGCTTCTCCTTAT                         TGTCTCTGCAACTGGAATGTCTTTTAGTCTCTTAGTTGTTGCAATCACATT
genomic: AGTCTAACTTTGTGGCTGGCAGACAAATCTGGTCGCCGGCTTCTCCTTATtgtgagtctg ... ttgtattgcaGGTCTCTGCAACTGGAATGTCTTTTAGTCTCTTAGTTGTTGCAATCACATT
EST: gi|7591479|gb|AW707211.1|AW707211
EST:     AGTCTAACTTTGTGGCTGGCAGACAAATCTGGTCGCCGGCTTCTCCTTAT                         TGTCTCTGCAACTGGAATGTCTTTTAGTCTCTTAGTTGTTGCAATCACATT
genomic: AGTCTAACTTTGTGGCTGGCAGACAAATCTGGTCGCCGGCTTCTCCTTATtgtgagtctg ... ttgtattgcaGGTCTCTGCAACTGGAATGTCTTTTAGTCTCTTAGTTGTTGCAATCACATT
EST: gi|7640206|gb|AW734512.1|AW734512
EST:     GCAGACAAATCTGGTCGCCGGCTTCTCCTTAT                         TGTCTCTGCAACTGGAATGTCTTTTAGTCTCTTAGTTGTTGCAATCACATT
genomic: GCAGACAAATCTGGTCGCCGGCTTCTCCTTATtgtgagtctg ... ttgtattgcaGGTCTCTGCAACTGGAATGTCTTTTAGTCTCTTAGTTGTTGCAATCACATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gactacttgtttggaggattagaaagagaatgaccaaatctttcattgtattgcaGGTCTCTGCAACTGGAATGTCTTTTAGTCTCTTAGTTGTTGCAATCACATTCTACATAAA
                                      tctttcatt  CT-rich tract
 attagaaa  TA-rich tract