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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcatatctattttgtccaagaatctgtacatttatgaatccagttaacaccatttttttgttaggagttacctgaagcattttatttccaaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTATTTCTCTCCTTTAAGTGAAGTTCAATCTGAATTAGTGCTGCCAACAGCTT

Basic information

species Glycine max
transcript GLYMA17G33950.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58016101|gb|CX702843.1|CX702843
EST:     GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAG                         TGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
genomic: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAGgcatatctat ... aaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
EST: gi|22927849|gb|BU544988.1|BU544988
EST:     GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAG                         TGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
genomic: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAGgcatatctat ... aaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
EST: gi|13789075|gb|BG651676.1|BG651676
EST:     GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAG                         TGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
genomic: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAGgcatatctat ... aaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
EST: gi|23733361|gb|BU764875.1|BU764875
EST:     GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAG                         TGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
genomic: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAGgcatatctat ... aaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
EST: gi|193471542|gb|FK436643.1|FK436643
EST:     GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAG                         TGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
genomic: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAGgcatatctat ... aaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
EST: gi|58023163|gb|CX709904.1|CX709904
EST:     GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAG                         TGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
genomic: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAGgcatatctat ... aaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taacaccatttttttgttaggagttacctgaagcattttatttccaaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTATTTCTCTCCTTTAAGTGAAGTTCAATCTGAATTAGTGCTGCCAACAGCTT
 agttaac  putative branch site (score: 3)
 attttatttccaaaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcatatctattttgtccaagaatctgtacatttatgaatccagttaacaccatttttttgttaggagttacctgaagcattttatttccaaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTATTTCTCTCCTTTAAGTGAAGTTCAATCTGAATTAGTGCTGCCAACAGCTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC