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gcatatctattttgtccaagaatctgtacatttatgaatccagttaacaccatttttttgttaggagttacctgaagcattttatttccaaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTATTTCTCTCCTTTAAGTGAAGTTCAATCTGAATTAGTGCTGCCAACAGCTT
species | Glycine max |
transcript | GLYMA17G33950.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAG TGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTATEST: gi|22927849|gb|BU544988.1|BU544988
genomic: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAGgcatatctat ... aaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
EST: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAG TGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTATEST: gi|13789075|gb|BG651676.1|BG651676
genomic: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAGgcatatctat ... aaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
EST: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAG TGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTATEST: gi|23733361|gb|BU764875.1|BU764875
genomic: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAGgcatatctat ... aaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
EST: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAG TGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTATEST: gi|193471542|gb|FK436643.1|FK436643
genomic: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAGgcatatctat ... aaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
EST: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAG TGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTATEST: gi|58023163|gb|CX709904.1|CX709904
genomic: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAGgcatatctat ... aaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
EST: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAG TGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
genomic: GGTGTTCGGGCACGAATGGTTGATAGAGATTTTGCACCAAAGgcatatctat ... aaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTAT
taacaccatttttttgttaggagttacctgaagcattttatttccaaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTATTTCTCTCCTTTAAGTGAAGTTCAATCTGAATTAGTGCTGCCAACAGCTT
agttaac putative branch site (score: 3)
attttatttccaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatatctattttgtccaagaatctgtacatttatgaatccagttaacaccatttttttgttaggagttacctgaagcattttatttccaaaattgcagTGGGACCCACCTAGATTAAAAGATATATCAGAGGACATGGTTGAATACTATTTCTCTCCTTTAAGTGAAGTTCAATCTGAATTAGTGCTGCCAACAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC