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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtcaatgcattattctgggaaatcatcttatattgctttctctgttcaactgatttccagaaatttgcagtgaactcagcaattggccttcttgaaaattgacaaacaaaattaggaatgtctctattacttattcagtttacatatgaaatgtgacatttgctctgattttttttataatgcagGCTGTTTTGTGGTTCACAGATTCTCTAAAACAGAAAGCTACTCTTGAAGAGCATGCATCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTC

Basic information

species Glycine max
transcript GLYMA17G30910.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G30910.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv04s0008g04910.t01 (Vitis vinifera), 3'ss of exon 4
gttagtcaatgcattattctgggaaatcatcttatattgctttctctgttcaactgatttccagaaatttgcagtgaactcagcaattggccttcttgaaaattgacaaacaaaattaggaatgtctctattacttattcagt-ttacatatgaa--atgtgacatttgctctgattttttttataatgcagGCTGTTTTGTGGTTCACAGATTCTCTAAAACAGAAAGCTACTCTTGAAGAGCATGCATCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTC
                      | ||    |  |    | ||    | | | |   |||   | || |      ||||   |||| |   | |   |||  |  |   | |   | |  |  |     | || | || | ||  | | | | |||  |    ||   |  ||| | |  ||||| ||||||||| || |||||||  |||||  || ||||    ||| |||| |||||||| ||| ||   |||||||||||||||||||||||||| |||||||  ||||
----------------------gtaagtgcc--aagaggattaaagtatcctat--attattaaaagtgaatgttgaag--agcactaaacatg--tgatgaagggggagctgtaat--gcttcatcatgttgcatagttaggatcatagaagaataactgaactacttttcttaatggtttta-aatgcagGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCTGCGTC

upper sequence: GLYMA17G30910.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv04s0008g04890.t01 (Vitis vinifera), 3'ss of exon 14
gttagtcaatgcattattctgggaaatcatcttatattgctttctctgttcaactgatttccagaaatttgcagtgaactcagcaattggccttcttgaaaattgacaaacaaaattaggaatgtctctattacttattcagt-ttacatatgaaatgtgacatttgct--ctgattttttttataatgcagGCTGTTTTGTGGTTCACAGATTCTCTAAAACAGAAAGCTACTCTTGAAGAGCATGCATCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTC
                      | ||    |  |    | ||    | | | |   |||   | || |      ||||   |||| |   | |   |||  |  |   | |  || |  |  |     | || | || | ||  | | | | |||       | | | |  || | |  | ||| ||||||||| || |||||||  |||||  || ||||    ||| |||| |||||||| ||| ||   |||||||||||||||||||||||||| |||||||| ||||
----------------------gtaagtgcc--aagaggattaaagtatcctat--attattaaaagtgaatgttgaag--agcactaaacatg--tgatgaagggggagctcaaat--gcttcatcgtgttgcatagttaggatcatagaagaataactgaactagttttcttaatggtctta-aatgcagGCAGTATTGTGGTATACAGACACTTTAAAGACAAAAACTACACTTGAAGAACATTCAATGTTAATCACTGATGTCCGTTTCAGTCCGAGCATGCCGCGTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattcagtttacatatgaaatgtgacatttgctctgattttttttataatgcagGCTGTTTTGTGGTTCACAGATTCTCTAAAACAGAAAGCTACTCTTGAAGAGCATGCATCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTC
                                ctctgat  putative branch site (score: 4)
                                ctctgatttttttt  CT-rich tract
                                 tctgattttttttata  TA-rich tract