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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtcaacattttagaagtgatggtgttcgtcaaatcatccgcttgaaattaggggctaaattttgtcctttgtttgcagAGAGCATGATGGAGCCATTTCTAAGATATCTATATACATATGTTTCGGTATCTGGTCCACACTTGGGGTATCTTTACAGTTCAAACTCTTTGTTTAATTC

Basic information

species Glycine max
transcript GLYMA17G26570.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G26570.1 (Glycine max), 3'ss of exon 13
lower sequence: AT1G58350.3 (Arabidopsis thaliana), 3'ss of exon 11
gtgtgtcaacattttagaagtgatggtgttcgtcaaatcatcc---gcttgaaattaggggctaaattttgtcctttgtt--tgcagAGAGCATGATGGAGCCATTTCTAAGATATCTATATACATATGTTTCGGTATCTGGTCCACACTTGGGGTATCTTTACAGTTCAAACTCTTTGTTTAATTC
       || ||| |   |    ||||     |  ||| |  |   | |     | || |  |      | || ||||||  | |||| ||  | ||||| ||||     |  |||||| | |||||| | ||| | || ||||| |||||||||||||| |||||| ||||||| |||||||||||
-----gtaatattctttgaactctggtaaatattgaatgactcttagttatgtttcagtgtttttgacatctcttttgttctttcagATAGTTTAATGGAACCATACAGGAAGTATCTACACACATATCTATCGCTTTCGGGTCCGCACTTGGGGTATCTGTACAGTACAAACTCCTTGTTTAATTC

upper sequence: GLYMA17G26570.1 (Glycine max), 3'ss of exon 13
lower sequence: AT1G09980.1 (Arabidopsis thaliana), 3'ss of exon 12
gtgtgtc---aacattttagaagtgatggt-------gttcgtcaaatca--tccgcttgaaattaggggctaaattttgtcctttgtttgcagAGAGCATGATGGAGCCATTTCTAAGATATCTATATACATATGTTTCGGTATCTGGTCCACACTTGGGGTATCTTTACAGTTCAAACTCTTTGTTTAATTC
|| |||    |  || |   |    ||| |       |||||| |||||   |  | |   ||| |           || |   ||  ||||||| ||  ||||||| ||||     |  ||| |  |||||||| | ||| | || |||||||||||||| ||||| ||||||||||| || |||||||||||
gtatgttcttagaatctctcagacaatgtttaaaacggttcgt-aaatcggttttggtgttaatcattattcccgacttatgtatttgttgcagATAGTTTGATGGATCCATACAGGAAGTATTTTCATACATATATATCGCTTTCGGGTCCACACTTGGGTTATCTATACAGTTCAAATTCCTTGTTTAATTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcgtcaaatcatccgcttgaaattaggggctaaattttgtcctttgtttgcagAGAGCATGATGGAGCCATTTCTAAGATATCTATATACATATGTTTCGGTATCTGGTCCACACTTGGGGTATCTTTACAGTTCAAACTCTTTGTTTAATTC
                             ggctaaa  putative branch site (score: 3)
                                    ttttgtcctttgttt  CT-rich tract
                                taaattttgt  TA-rich tract