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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acttttgatgacaatacctggttattttagatatccataatcttctgagtttatttttctccatttcaaaacaaaacttaccatttggtttgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTTGTTAGGACCTCCAACTTTAGACTCCCTTCTGATAATAAAGTGCCTATAA

Basic information

species Glycine max
transcript GLYMA17G07050.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14125979|gb|BG790417.1|BG790417
EST:     AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG                         AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGGCTCCTATTTT
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGG-CTCCTATTTT
EST: gi|15203101|gb|BI425869.1|BI425869
EST:     AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG                         AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
EST: gi|254332042|gb|GR846245.1|GR846245
EST:     AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG                         AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
EST: gi|254341892|gb|GR853029.1|GR853029
EST:     AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG                         AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
EST: gi|4286168|gb|AI441008.1|AI441008
EST:     AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG                         AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
EST: gi|4301393|gb|AI443184.1|AI443184
EST:     AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG                         AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
EST: gi|10710524|gb|BF010242.1|BF010242
EST:     AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG                         AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
EST: gi|26058284|gb|CA801198.1|CA801198
EST:     AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG                         AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagtttatttttctccatttcaaaacaaaacttaccatttggtttgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTTGTTAGGACCTCCAACTTTAGACTCCCTTCTGATAATAAAGTGCCTATAA
                 atttcaaaacaaaa  TA-rich tract