1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...acttttgatgacaatacctggttattttagatatccataatcttctgagtttatttttctccatttcaaaacaaaacttaccatttggtttgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTTGTTAGGACCTCCAACTTTAGACTCCCTTCTGATAATAAAGTGCCTATAA
species | Glycine max |
transcript | GLYMA17G07050.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGGCTCCTATTTTEST: gi|21594304|gb|BQ610119.1|BQ610119
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGG-CTCCTATTTT
EST: TGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTTEST: gi|15203101|gb|BI425869.1|BI425869
genomic: TGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
EST: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTTEST: gi|254332042|gb|GR846245.1|GR846245
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
EST: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTTEST: gi|254341892|gb|GR853029.1|GR853029
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
EST: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTTEST: gi|4286168|gb|AI441008.1|AI441008
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
EST: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTTEST: gi|4301393|gb|AI443184.1|AI443184
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
EST: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTTEST: gi|10710524|gb|BF010242.1|BF010242
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
EST: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTTEST: gi|26058284|gb|CA801198.1|CA801198
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
EST: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAG AATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
genomic: AAATGCCCACCGGAAGGATTCACAAAGGAGTGTGTTCAACATGGATGAAGgtacttatat ... tgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTT
tgagtttatttttctccatttcaaaacaaaacttaccatttggtttgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTTGTTAGGACCTCCAACTTTAGACTCCCTTCTGATAATAAAGTGCCTATAA
atttcaaaacaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acttttgatgacaatacctggttattttagatatccataatcttctgagtttatttttctccatttcaaaacaaaacttaccatttggtttgatgtccagAATTCTGTACCATTGGAGAAAAGCCAGGACTGCAGTTGGGCTCCTATTTTTGTTAGGACCTCCAACTTTAGACTCCCTTCTGATAATAAAGTGCCTATAA
- - -tgatgac
- - - - - - -atacctg
- - - - - - - - - - - - - - - - - - - - tcttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttacca