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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgcctgaaagtatttttaagtgttgatttgtgttaatttatattgataatgcattcaattttaaggtagagaataatgtgataatgtgttgtattacagGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG

Basic information

species Glycine max
transcript GLYMA17G07040.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G07040.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv11s0052g00890.t01 (Vitis vinifera), 3'ss of exon 13
ttgcctgaaagtatttttaagtgttgatt--tgtgttaatttatattgataatgcatt--caattttaaggta-gagaataatgtgataatgtgttgtattacagGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG
     |  |||||| ||||   ||| | |  ||||||| | | |     |  | | ||  ||   ||||  || || | ||||   |||||| |||  | | ||||| || |||||||||||||||||||| || ||||| ||||||||
-----ttcaagtatgtttagcagtttaataatgtgttactctcttcatctttttctttgtcatggttaacttaagacagtaatacaataatgggtttaactgcagGCGTCGATAATGTCTAAACATCTTGCTAAGTCTGAGAGGCCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31457335|gb|CD399363.1|CD399363
EST:     TGAGCTTGAAGCTCAACTTGTCGAAGCAAGGAGCATCTATACAGGAGCAG                         GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG
genomic: TGAGCTTGAAGCTCAACTTGTCGAAGCAAGGAGCATC-ATACAGGAGCAGgtaatgtttt ... tgtattacagGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG
EST: gi|209709785|gb|BW674001.1|BW674001
EST:     TTGAGCTTGAAGCTCAACTTGTCGAAGCAAGGAGCATCATACAGGAGCAG                         GCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG
genomic: TTGAGCTTGAAGCTCAACTTGTCGAAGCAAGGAGCATCATACAGGAGCAGgtaatgtttt ... tgtattacagGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gataatgcattcaattttaaggtagagaataatgtgataatgtgttgtattacagGCATCAATAATGTCTAAACATCTTGCAAAATCTGACAGGCCAAG
 tattgat  putative branch site (score: 3)
                           aataatgtgataat  TA-rich tract