Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtttgaaacttgtagtgactatgatactgcttcctattttacacatcattcacaaggcattttctgtctttctcagCCTTATGCTGCAGCAAAAGCTCGAGAATATCTTGACAAACCTGCTATACATGAGACAATGGTTAAG

Basic information

species Glycine max
transcript GLYMA17G05410.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05410.1 (Glycine max), 3'ss of exon 13
lower sequence: LOC_Os03g02150.1 (Oryza sativa), 3'ss of exon 13
gtgtgtttgaa-acttgtagtgactatgatactgcttcctattttacacatcattcacaaggcat--tttctgtctttctcagCCTTATGCTGCAGCAAAAGCTCGAGAATATCTTGACAAACCTGCTATACATGAGACAATGGTTAAG
  ||  ||| | | || |  |  |   ||||    |  | |||||     |    |   | |  |   || |   ||| |||||| |||||||||||||| ||| ||||||| || ||||| |||||| | ||||| ||||||||||||
--gttcttgcatatttctgattgcc--gatagctatctcaattttgtttgttgaacttgaagtttgacttgtaattttatcagCCATATGCTGCAGCAAAGGCTAGAGAATACCTCGACAAGCCTGCTTTGCATGAAACAATGGTTAAG

upper sequence: GLYMA17G05410.1 (Glycine max), 3'ss of exon 13
lower sequence: GRMZM2G137236_T01 (Zea mays), 3'ss of exon 14
gtgtgtttgaaacttgtagt-gactatgatactgcttcctattttacacatcattcacaaggcattttctgt--ctttctcagCCTTATGCTGCAGCAAAAGCTCGAGAATATCTTGACAAACCTGCTATACATGAGACAATGGTTAAG
|| ||| | | |  | |||| ||  |  ||  |   | || ||||       ||| |     |||||| ||    ||| |||| | || |||||| | |||||  |||||||||||||||| |||||| |||||||||| ||||| |||
gtttgtgt-atatatatagttgagcaaaatcatctctacttttttttttga-atttatggttcattttttgcaattttatcagTCATACGCTGCAACTAAAGCGAGAGAATATCTTGACAAGCCTGCTTTACATGAGACGATGGTCAAG

upper sequence: GLYMA17G05410.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv06s0061g01170.t01 (Vitis vinifera), 3'ss of exon 13
-------gtgtgtttgaaacttgtagtgactatgatactgcttcctattttacacatcattcacaaggcattttctgtct--------ttctcagCCTTATGCTGCAGCAAAAGCTCGAGAATATCTTGACAAACCTGCTATACATGAGACAATGGTTAAG
          | |||    | || | | | |    |  ||  | |||||| | |  |||| ||  |   | ||||  | |        |  |||||| ||||| |||||||| ||  |||| ||||||||||| |||||||| |||||||||||||| |||
gtgatcatcatctttcttgcatg-attcattggattggtgtcttctatttcagaagtcatccaataattaatttccttgtactttacatcttcagCCCTATGCAGCAGCAAAGGCAAGAGAGTATCTTGACAAGCCTGCTATCCATGAGACAATGGTCAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193557084|gb|FK512727.1|FK512727
EST:     ACATATGGTTTCGGGTGGTTCAGTTTGTTACAAACAATGAAGACTTACAG                         CCTTATGCTGCAGCAAAAGCTCGAGAATATCTTGACAAACCTGCTATACAT
genomic: ACATATGGTTTCGGGTGGTTCAGTTTGTTACAAACAATGAAGACTTACAGgtgtgtttga ... tctttctcagCCTTATGCTGCAGCAAAAGCTCGAGAATATCTTGACAAACCTGCTATACAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatactgcttcctattttacacatcattcacaaggcattttctgtctttctcagCCTTATGCTGCAGCAAAAGCTCGAGAATATCTTGACAAACCTGCTATACATGAGACAATGGTTAAG
                                    cattttctgtctttct  CT-rich tract
             tattttaca  TA-rich tract