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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtaattattctctttttttttatgctagatgtgaacttttaagtttcaatgatattacttgcttcatatctttatggaaggaaatcttattgattgtaatttaaagtgcagGTCTGTCAACTTGAACATCAACTTTTTGATCATTTTTTCCCAGCTTCTTCAAAGGATATTTCTAGTTTAGCTCCATTAATGGATCCTCT

Basic information

species Glycine max
transcript GLYMA17G04990.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G04990.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv11s0016g00350.t01 (Vitis vinifera), 3'ss of exon 14
gtactgtaattattctctttttttttatgctagatgtgaacttttaagtttcaatgatattacttgcttcatatctttatggaaggaaatcttattgattgtaatttaaagtgcagGTCTGTCAACTTGAACATCAACTTTTTGATCATTTTTTCCCAGCTTCTTCAAAGGATATTTCTAGTTTAGCTCCATTAATGGATCCTCT
        | |  | ||  | || | |  ||   | | |  |   ||    ||  ||||| |  ||    | |  |||   ||||  | | | |||||   || | ||||  |||||||||||||||||| || || || |||||||||||||||||  |||||||  |||||||||| | ||||||||||||||| ||||||||
--------actgctgtccctgttataaacctctgtattag-tggaaaagaacatagatatcatatg----aaagattt---gaagccattttaattgaaattattgtaaatggcagGTCTGTCAACTTGAGCACCAGCTCTTTGATCATTTTTTCCCTTCTTCTTCCGAGGATATTTCAAATTTAGCTCCATTAATAGATCCTCT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acttgcttcatatctttatggaaggaaatcttattgattgtaatttaaagtgcagGTCTGTCAACTTGAACATCAACTTTTTGATCATTTTTTCCCAGCTTCTTCAAAGGATATTTCTAGTTTAGCTCCATTAATGGATCCTCT
                               tattgat  putative branch site (score: 3)
                         aaatcttattgattgt  TA-rich tract