1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...cttttgtatcttgtttcaaagtatttgtacttatgctactatcttgataagcatatatgtcaccaagtggactcaatgttttgttctaatgtgatgttagATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAGCTGCTTGCATGCTTCTGAGGATTGATGATATAGTGAGTGGGATCAAGA
species | Glycine max |
transcript | GLYMA16G33380.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAG ATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|13180864|gb|BG352204.1|BG352204
genomic: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAGgtacttcact ... gtgatgttagATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAG ATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|6071767|gb|AW101154.1|AW101154
genomic: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAGgtacttcact ... gtgatgttagATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAG ATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|254341468|gb|GR850681.1|GR850681
genomic: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAGgtacttcact ... gtgatgttagATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAG ATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|193665184|gb|FK607938.1|FK607938
genomic: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAGgtacttcact ... gtgatgttagATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAG ATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|192305641|gb|FG998019.1|FG998019
genomic: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAGgtacttcact ... gtgatgttagATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAG ACCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|9440409|gb|BE440914.1|BE440914
genomic: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAGgtacttcact ... gtgatgttagATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAG ATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAEST: gi|254341467|gb|GR850680.1|GR850680
genomic: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAGgtacttcact ... gtgatgttagATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
EST: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAG ATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
genomic: TTGGTATAGATGGAAATACTGGTAGTATCACTGACATGAAAGAGTGCAAGgtacttcact ... gtgatgttagATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAA
gataagcatatatgtcaccaagtggactcaatgttttgttctaatgtgatgttagATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAGCTGCTTGCATGCTTCTGAGGATTGATGATATAGTGAGTGGGATCAAGA
ttctaat putative branch site (score: 2)
atatatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttgtatcttgtttcaaagtatttgtacttatgctactatcttgataagcatatatgtcaccaagtggactcaatgttttgttctaatgtgatgttagATCTGGGATGCCTACAATGTGAAGGCACAAGCATTTAAGACTGCCATTGAAGCTGCTTGCATGCTTCTGAGGATTGATGATATAGTGAGTGGGATCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - -tgctact
- - - - - - - - - - - - - - - - - - - - - - - - - gcatata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcaatg