1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...gccgttactattattagtgaacataaattttatctacaggctccttatttttgaacctggatatatacaagaatcttatttatattatatccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAGGGAGAGAATGCTACGAGGTTTCTTGGGAAGGAATGGATGGACTTGAAA
species | Glycine max |
transcript | GLYMA16G31860.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|208119644|gb|GD914301.1|GD914301
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: ATTCGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|207736233|gb|GD711314.1|GD711314
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|208027392|gb|GD825818.1|GD825818
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAA ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCEST: gi|193672847|gb|FK619843.1|FK619843
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGC
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|193402040|gb|FK369401.1|FK369401
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|208193328|gb|GD990295.1|GD990295
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|208276575|gb|GE076997.1|GE076997
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: AACCTTCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|208226795|gb|GE021936.1|GE021936
genomic: AACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|193727273|gb|FK666269.1|FK666269
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: TTGGACTGAACCTTCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|207710468|gb|GD690704.1|GD690704
genomic: TTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCCTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|208254446|gb|GE052154.1|GE052154
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCCTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|193633885|gb|FK582029.1|FK582029
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|208197780|gb|GE001158.1|GE001158
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|193565849|gb|FK523218.1|FK523218
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACC-TCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAACTCATTAAGAGCCGAAGAGTTCAAEST: gi|193358758|gb|FK328436.1|FK328436
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|207773278|gb|GD743184.1|GD743184
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAEST: gi|207794518|gb|GD767167.1|GD767167
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
EST: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAG ATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
genomic: ATTTGCGTTTAACTTCATCTGAAGTTGGACTGAACCTTCCTTTACATGAGgtactgctaa ... ccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAA
tatttttgaacctggatatatacaagaatcttatttatattatatccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAGGGAGAGAATGCTACGAGGTTTCTTGGGAAGGAATGGATGGACTTGAAA
atatatacaagaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccgttactattattagtgaacataaattttatctacaggctccttatttttgaacctggatatatacaagaatcttatttatattatatccgatcacagATCCCTGTGAAGTGTCCTGTGTCAGAAATCATTAAGAGCCGAAGAGTTCAAGGGAGAGAATGCTACGAGGTTTCTTGGGAAGGAATGGATGGACTTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - -agtgaac
- - - - - - - - - - - - - - - - -ctacagg