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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatagttgcttttgcattataaaacttagcagtgattacttattttgaatatgttaacttatgatggtatatctccttcccaattttatctctcaccatttcgtttcttttctgtggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCAAACCAATGGGGATCTGTTGGTTTTTACATCAACCTTCAATCCTATGAAA

Basic information

species Glycine max
transcript GLYMA16G27210.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G27210.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv05s0051g00870.t01 (Vitis vinifera), 3'ss of exon 14
gtatagttgcttttgcattataaaacttagcagtgattacttattttgaatatgttaacttatgatggtatatctccttcccaattttatctctcaccatttcgtttcttttctgtggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCAAACCAATGGGGATCTGTTGGTTTTTACATCAACCTTCAATCCTATGAAA
                          ||   |   | ||  ||  || |  ||  | |   |     |||| | | |          | | | |    || | | | | ||  |||| |  |||||  | ||||| |||||||| || ||| | || || || ||||| | ||| ||| |  | || ||  | |||||||| ||||||||||||||||| ||||||
------------------------ttttcctatgaagtagctaacttaatgatcctgaagcacctctgtatcttttccatttgggaatctgttt-gtgatattggtaccttcatgtg-tcatgcagTTTACCACCCCTTTCTGTTGTGGGTTTGAGCGAAGAACAGGCTACAGATCAAGCAGAGGGAGACATTTTGGTTTTCACATCAACCTTCAATCCAATGAAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193731540|gb|FK667466.1|FK667466
EST:     GCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|9820553|gb|BE556063.1|BE556063
EST:     AAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: AAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|207691204|gb|GD673212.1|GD673212
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|207691197|gb|GD673205.1|GD673205
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|21256789|gb|BQ453677.1|BQ453677
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|11412011|gb|BF424022.1|BF424022
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|15202278|gb|BI425317.1|BI425317
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|254323261|gb|GR840066.1|GR840066
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|14012095|gb|BG727026.1|BG727026
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|7589454|gb|AW705228.1|AW705228
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
EST: gi|57575684|gb|CX548659.1|CX548659
EST:     GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAG                         CATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA
genomic: GGGCAAACAATCAAGCCAGACTACAGTAATATTCCCTATGCAGTGTTCAGgtatagttgc ... ggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctccttcccaattttatctctcaccatttcgtttcttttctgtggttctgcagCATTCCACCACTTTCTGTAGTTGGTCTCAGTGAGGAGCAGGCAATAGAGCAAACCAATGGGGATCTGTTGGTTTTTACATCAACCTTCAATCCTATGAAA
                   ctctcac  putative branch site (score: 3)
           aattttatct  TA-rich tract