1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttgtatttcttttcctttatttcttcatgagtgttacagtaacatacacatgttaatgttggcgactttcactgatgcctatactgtttatctatgatagGCTGGTAGTGTCTCCCGAAGAAGCACAAAACAAAGACTCAAGATCATTTGTCAAAGCAATACTAATAAAGGTTACAGATTTGTTGGTAAAGGCAAAG
species | Glycine max |
transcript | GLYMA16G26550.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGTTCTTTGGATTCCATGGTGTCTTCTGCCATGTCAACAGAAACTAGCAG GCTGGTAGTGTCTCCCGAAGAAGCACAAAACAAAGACTCAAGATCATTTGTEST: gi|58021111|gb|CX707853.1|CX707853
genomic: AGTTCTTTGGATTCCATGGTGTCTTCTGCCATGTCAACAGAAACTAGCAGgtactgtatg ... tctatgatagGCTGGTAGTGTCTCCCGAAGAAGCACAAAACAAAGACTCAAGATCATTTGT
EST: AGTTCTTTGGATTCCATGGTGTCTTCTGCCATGTCAACAGAAACTAGCAG GCTGGTAGTGTCTCCCGAAGAAGCACAAAACAAAGACTCAAGATCATTTGT
genomic: AGTTCTTTGGATTCCATGGTGTCTTCTGCCATGTCAACAGAAACTAGCAGgtactgtatg ... tctatgatagGCTGGTAGTGTCTCCCGAAGAAGCACAAAACAAAGACTCAAGATCATTTGT
acacatgttaatgttggcgactttcactgatgcctatactgtttatctatgatagGCTGGTAGTGTCTCCCGAAGAAGCACAAAACAAAGACTCAAGATCATTTGTCAAAGCAATACTAATAAAGGTTACAGATTTGTTGGTAAAGGCAAAG
cactgat putative branch site (score: 3)
tttatct putative PPT
tttatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtatttcttttcctttatttcttcatgagtgttacagtaacatacacatgttaatgttggcgactttcactgatgcctatactgtttatctatgatagGCTGGTAGTGTCTCCCGAAGAAGCACAAAACAAAGACTCAAGATCATTTGTCAAAGCAATACTAATAAAGGTTACAGATTTGTTGGTAAAGGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - -tgagtgt
- - - - - - - - - - - - - - - - - - - - - catacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatgcct