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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatgaagcaaaattcattcatttgtaaccattttctaatatctattatactaaagatggttatgaagttcaataaaatttgagatctgttatcacttctgcagATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTTTATCTGGAG

Basic information

species Glycine max
transcript GLYMA16G25310.2
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13480808|gb|BG510151.1|BG510151
EST:     GAATTTCCACATGGTTGGTGGACAAAAGTGGCCGGAGGCTGCTTCTAATA                         ATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTT
genomic: GAATTTCCACATGGTTGGTGGACAAAAGTGGCCGGAGGCTGCTTCTAATAgtgagtatga ... acttctgcagATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTT
EST: gi|22523104|gb|BU081915.1|BU081915
EST:     GAATTTCCACATGGTTGGTGGACAAAAGTGGCCGGAGGCTGCTTCTAATA                         ATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTT
genomic: GAATTTCCACATGGTTGGTGGACAAAAGTGGCCGGAGGCTGCTTCTAATAgtgagtatga ... acttctgcagATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actaaagatggttatgaagttcaataaaatttgagatctgttatcacttctgcagATATCCTCATCTGTAATGACAGTTAGCCTTCTCATTGTTTCTATAGCATTTTATCTGGAG
 tactaaa  putative branch site (score: 1)
                                           tcacttct  putative PPT
           ttatgaagttcaataa  TA-rich tract