1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...ttcataagattgatctattattttttattatgtaatatatatacacacacaatgcatctgacttgatttcctactgtctttcaattctatcatgttgcagCCTGATTCCTTGGGACCTTTGGATTTGGAAATACCATCATCAACTAAATACCATAGCGAAGATCTAATTTTTAGTGATAGTCTTAGTGGACTGAATCGCT
species | Glycine max |
transcript | GLYMA16G23840.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCCAGGAGCATTTAGGAAAGGATTTTAGTGCGCTGGCAGATATGTATTGG CCTGATTCCTTGGGACCTTTGGATTTGGAAATACCATCATCAACTAAATACEST: gi|209720418|gb|BW672811.1|BW672811
genomic: TCCAGGAGCATTTAGGAAAGGATTTTAGTGCGCTGGCAGATATGTATTGGgtattttttt ... catgttgcagCCTGATTCCTTGGGACCTTTGGATTTGGAAATACCATCATCAACTAAATAC
EST: AGCATTTAGGAAAGGATTTTAGTGCGCTGGCAGATATGTATTGG CCTGATTCCTTGGGACCTTTGGATTTGGAAATACCATCATCAACTAAATACEST: gi|58019926|gb|CX706668.1|CX706668
genomic: AGCATTTAGGAAAGGATTTTAGTGCGCTGGCAGATATGTATTGGgtattttttt ... catgttgcagCCTGATTCCTTGGGACCTTTGGATTTGGAAATACCATCATCAACTAAATAC
EST: TCCAGGAGCATTTAGGAAAGGATTTTAGTGCGCTGGCAGATATGTATTGG CCTGATTCCTTGGGACCTTTGGATTTGGAAATACCATCATCAACTAAATAC
genomic: TCCAGGAGCATTTAGGAAAGGATTTTAGTGCGCTGGCAGATATGTATTGGgtattttttt ... catgttgcagCCTGATTCCTTGGGACCTTTGGATTTGGAAATACCATCATCAACTAAATAC
cacacaatgcatctgacttgatttcctactgtctttcaattctatcatgttgcagCCTGATTCCTTGGGACCTTTGGATTTGGAAATACCATCATCAACTAAATACCATAGCGAAGATCTAATTTTTAGTGATAGTCTTAGTGGACTGAATCGCT
ttctatc CT-rich tract
tttcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcataagattgatctattattttttattatgtaatatatatacacacacaatgcatctgacttgatttcctactgtctttcaattctatcatgttgcagCCTGATTCCTTGGGACCTTTGGATTTGGAAATACCATCATCAACTAAATACCATAGCGAAGATCTAATTTTTAGTGATAGTCTTAGTGGACTGAATCGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcatctg