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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcttcccaagaaggctggaaatttctgctcaacttgattttgctatttttttctgtgcatgtgtgcatgctttatttcacttattcaacttgattgaactaatgaatgctatacatattgaacttgtaatagAAAGTCAAATACGACTGGCTCTTATAGATTTTCTGAAAGGGCTTGTTGAATTTGATCCTGCAAAACGCTGGTCACCCTTTCAG

Basic information

species Glycine max
transcript GLYMA16G18110.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G18110.1 (Glycine max), 3'ss of exon 13
lower sequence: AT5G35980.1 (Arabidopsis thaliana), 3'ss of exon 11
gttagcttcccaagaaggctggaaatttctgctcaacttgattttgctatttttttctgtgcatgtgtgcatgctttatttcacttattcaacttgattgaactaatgaatgctatacatattgaacttgtaatagAAAGTCAAATACGACTGGCTCTTATAGATTTTCTGAAAGGGCTTGTTGAATTTGATCCTGCAAAACGCTGGTCACCCTTTCAG
                           |    |||  ||| || || | || ||| || ||| |   |            |||||     | ||||  |||   | ||  |  | |   |   |||||  | | ||||| |||||| ||  | |||||||| |||||||||||||| ||| | ||||||||||| |||||||| |||||||| ||||||
--------------------------gtaaagtcaggttg-ttctgatgttctttactttgctttgataa----------tcactggactatcttgcatga-tgactgttttttttttttcacgaact-atcacagAAACTCAAATCCGGTTAGCTCTTATTGATTTTCTGAAAGGACTTATGGAATTTGATCCAGCAAAACGTTGGTCACCTTTTCAG

upper sequence: GLYMA16G18110.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv16s0039g00610.t01 (Vitis vinifera), 3'ss of exon 10
gttagcttcccaagaaggctggaaatttctgctcaacttgattttgctatttttttctgtgcatgtgtgcatgctttatttcacttattcaacttgattgaactaatgaatgctatacatattgaacttgtaatagAAAGTCAAATACGACTGGCTCTTATAGATTTTCTGAAAGGGCTTGTTGAATTTGATCCTGCAAAACGCTGGTCACCCTTTCAG
|||| |||||        ||   |  |  |   || |   |     ||   ||  || ||   ||  || ||  |||  |    | ||||||   || |  |||||||| | ||||      ||||| ||| | |||||||| | | ||  |||| || || |||||  |||  || || |||||||||||||||||||| || |||||||| ||||||
gttaccttccatgttcttctctta--tcataagcagcagcagaagactgaattaatcagtttttgc-tgaatattttgatcttatcattcaaa--gaatttactaatgattcctatcg----tgaacatgtgacagAAAGTCGAGTTCGGTTGGCACTGATTGATTTCTTGAGGGGACTGGTTGAATTTGATCCTGCAAAGCGGTGGTCACCTTTTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacttattcaacttgattgaactaatgaatgctatacatattgaacttgtaatagAAAGTCAAATACGACTGGCTCTTATAGATTTTCTGAAAGGGCTTGTTGAATTTGATCCTGCAAAACGCTGGTCACCCTTTCAG
                   aactaat  putative branch site (score: 2)
                                tatacatatt  TA-rich tract