1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...tttcccaatcatttgtgatatacccaaaatatttggacttgtgatgtgtggtatggtatgtgaacagaacatgatactcattcatttataaacattacagGTGTGCAAAGGAAGCTGGATATGGCAAATGAG
species | Glycine max |
transcript | GLYMA16G17580.2 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AATCACCAACAATTTTAGTTCCCCGAAATTACAAGCTTCTATAGCTTCAG GTGTGCAAAGGAAGCTGGATATGGCAAATGAGEST: gi|193499799|gb|FK464716.1|FK464716
genomic: AATCACCAACAATTTTAGTTCCCCGAAATTACAAGCTTCTATAGCTTCAGgtgatataat ... aacattacagGTGTGCAAAGGAAGCTGGATATGGCAAATGAG
EST: AATCACCAACAATTTTAGTTCCCCGAAATTACAAGCTTCTATAGCTTCAG GTGTGCAAAGGAAGCTGGATATGGCEST: gi|207706391|gb|GD687009.1|GD687009
genomic: AATCACCAACAATTTTAGTTCCCCGAAATTACAAGCTTCTATAGCTTCAGgtgatataat ... aacattacagGTGTGCAAAGGAAGCTGGATATGGC
EST: AATCACCAACAATTTTAGTTCCCCGAAATTACAAGCTTCTATAGCTTCAG GTGTGCAAAGGAAGCTGGATATGGC
genomic: AATCACCAACAATTTTAGTTCCCCGAAATTACAAGCTTCTATAGCTTCAGgtgatataat ... aacattacagGTGTGCAAAGGAAGCTGGATATGGC
gtgtggtatggtatgtgaacagaacatgatactcattcatttataaacattacagGTGTGCAAAGGAAGCTGGATATGGCAAATGAG
attcatttataaacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcccaatcatttgtgatatacccaaaatatttggacttgtgatgtgtggtatggtatgtgaacagaacatgatactcattcatttataaacattacagGTGTGCAAAGGAAGCTGGATATGGCAAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - ccaatca
- - - - - - - - - - - cccaaaa
- - - - - - - - - - - - - - - - - - acttgtg
- - - - - - - - - - - - - - - - - - - - - - tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgata