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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgtttaaaataaaggggtgtttaagtctcattactggtaggtttattactatcttttcctttatatcaagagctaacttgtttgcataacattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGTGAGATAGATTGTGCCTACCCTTGCAACCCTACTTGCCATAATCGTATTT

Basic information

species Glycine max
transcript GLYMA16G17190.3
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G17190.3 (Glycine max), 3'ss of exon 13
lower sequence: AT4G19420.1 (Arabidopsis thaliana), 3'ss of exon 12
atgtttaaaataaag-gggtgttt----aagtctcattactggtaggtttattactatc--ttttcctttatatcaagagctaacttgtttgcataacattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGTGAGATAGATTGTGCCTACCCTTGCAACCCTACTTGCCATAATCGTATTT
  ||  |||| ||||      ||     || |||  | |     |   | ||||  |||  | || | || | |    |     | |  || | |   | | ||||| |||| ||||| || || || |||||| |||||||  |||     || |   ||||||||||| | |||||||| ||||||||||||||  |  |  |||
--gtacaaaaaaaagcaaacattctccaaattcttgtcaaacaaaatgtcattagaatcaatgttacattgtgttttcatgattcattatttcttcttaatttgcagACAATAGCAAAAGCTGTTGGAGATTGGGTTTATGACAGAACATTGTTTCAGAAGATAGATTGTCCTTACCCTTGTAACCCTACTTGCCACCACAGGGTTT

upper sequence: GLYMA16G17190.3 (Glycine max), 3'ss of exon 13
lower sequence: Vv02s0087g00400.t01 (Vitis vinifera), 3'ss of exon 12
--atgtttaaaataaaggggtgtttaagtctcattactggtaggtttattactatcttttcctttatatcaagagctaa-----cttgtttgcataacattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGTGAGATAGATTGTGCCTACCCTTGCAACCCTACTTGCCATAATCGTATTT
  ||         ||   |  |    ||| ||| | ||        | |  ||   |||| |  | |  |||   || |     ||  ||     |      ||||| |||||||||||||||| || || ||||  ||||| || || || ||||   ||||||||||||||||||||||  || ||||||||||||| ||  |||
acattacccgtccaagttgcagccctagtttcactgct-------ctttctctgcttttttccatttgacaaagcctgaatattctcattcttccattggcatgcagACAATTGCAAAGGCAGTAGGAGACTGGTACTATGACCGGAGTCCATTCCAGAAGATAGATTGTGCCTACCCTTGTGACTCTACTTGCCATAACCGGGTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58019735|gb|CX706477.1|CX706477
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|151410996|gb|EV280811.1|EV280811
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|18733889|gb|BM527870.1|BM527870
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|208107570|gb|GD906085.1|GD906085
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTA
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTA
EST: gi|21676519|gb|BQ628870.1|BQ628870
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|151403161|gb|EV272971.1|EV272971
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|7234310|gb|AW569649.1|AW569649
EST:     AATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: AATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|8669044|gb|BE190146.1|BE190146
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|151403120|gb|EV272930.1|EV272930
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGCGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|58019984|gb|CX706726.1|CX706726
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|214005021|gb|DB985409.1|DB985409
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGAACGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|15663740|gb|BI701111.1|BI701111
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAATACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|58014637|gb|CX701379.1|CX701379
EST:     GAATACAAGAGACATGGTTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|31460697|gb|CD402725.1|CD402725
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|15814521|gb|BI786796.1|BI786796
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|58022806|gb|CX709547.1|CX709547
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|8825755|gb|BE209421.1|BE209421
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|6072077|gb|AW101396.1|AW101396
EST:     GAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|214009011|gb|DB987090.1|DB987090
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
EST: gi|23729995|gb|BU763106.1|BU763106
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTC
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTC
EST: gi|31467378|gb|CD409406.1|CD409406
EST:     GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACA                         TCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT
genomic: GAATACAAGAGACATGGCTGAGAAATGACTCCCCAGTGGTGGCCAAGACAgtaagaaact ... cattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attactatcttttcctttatatcaagagctaacttgtttgcataacattgtgcagTCAATTGCAAAGGCAGTGGGTGATTGGTTTTATGATCGAAGGCCCTTCCGTGAGATAGATTGTGCCTACCCTTGCAACCCTACTTGCCATAATCGTATTT
               tttatatcaa  TA-rich tract