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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtgtattttgtgtatgtagaccaaaaccagcactgatattcgtaggccaattttaatagcagaaatttctgttcatgctgacctttagttgatatttttttgaatggtttgtgttgcagCAACCGAGTATTGGACCTTATAGAGCACATGGCATTGGTGGGAGCTCAAAATTGAACACGATTAGTGTATGTTGTGTTGCAATTCTTGTTGAATAGGTTT

Basic information

species Glycine max
transcript GLYMA16G09020.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G09020.1 (Glycine max), 3'ss of exon 13
lower sequence: AT1G79530.1 (Arabidopsis thaliana), 3'ss of exon 13
gtatgtgtgtattttgtgtatgtagaccaaaaccagcactgatattcgtaggccaattttaatagcagaaatttctgttcatgctgacctttagttgatatttttttgaatggtttgtgttgcagCAACCGAGTATTGGACCTTATAGAGCACATGGCATTGGTGGGAGCTCAAAATTGAACACG---ATTAGTGTATGTTGTGTTGCAATTCTTGTTGAATAGGTTT
                                    ||||  | ||  |   |  || ||  |      |    ||     | || ||  |||    | || || |   ||  |||   || ||||||||||||  | |||||||||||||||||||| ||||| |  ||     | | || ||    |  |||   ||  |       | ||||  ||  |   |||
---------------------------------gtacacttttgtttctcatcttatatttctcatcctag---ctaacagttctaacacttaa---aaatcttctcccat--tttac-ttacagCAACCGAGTTCTTGACCTTATAGAGCACATGGCTTTGGTAGCTGCCAGCCACTAAATACACACACCAGTTCTTGCAGAAGCTTGAGTCTTTCTGCTT---TTT

upper sequence: GLYMA16G09020.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv19s0085g00600.t01 (Vitis vinifera), 3'ss of exon 13
gtatgtgtgtattttgtgtatgtagaccaaaaccagcactgatattcgtaggccaattttaatagcagaaatttctgttcatgctgacctt-tagttgatatttttt-tgaatggtttgtgttgcagCAACCGAGTATTGGACCTTATAGAGCACATGGCATTGGTGGGAGCTCAAAATTGAACACGATTAGTGTATGTTGTGTTGCAATTCTTGTTGAATAGGTTT
               ||  |    | |     |   |  |   |  |  |   || |   |    ||||  || | | |  |||| |  |  |  |  ||| |  || |    ||||| | || ||||||||||||  ||||||| ||||||||||||||||||||||  ||    || |||                                             
---------------gtacaacacggctctctctctctttctcacacacacagca-tgcaagcctcagagcttccaggtggtgctaatgtgatgatacataatggttattttcggtttttcttacagCAACCGAGTGCTGGACCTCATAGAGCACATGGCATTGGTGGCGGCCAGCAAATGA---------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254346562|gb|GR856284.1|GR856284
EST:     GCTTCCTTTGTTAAGCTGGTTTCGTGGTATGACAATGAGTGGGGTTACAG                         CAACCGAGTATTGGACCTTATAGAGCACATGGCATTGGTGGGAGCTCAAAA
genomic: GCTTCCTTTGTTAAGCTGGTTTCGTGGTATGACAATGAGTGGGGTTACAGgtatgtgtgt ... tgtgttgcagCAACCGAGTATTGGACCTTATAGAGCACATGGCATTGGTGGGAGCTCAAAA
EST: gi|208279730|gb|GE080068.1|GE080068
EST:     GCTTCCTTTGTTAAGCTGGTTTCGTGGTATGACAATGAGTGGGGTTACAG                         CAACCGAGTATTGGACCTTATAGAGCACATGGCATTGGTGGGAGCTCAAAA
genomic: GCTTCCTTTGTTAAGCTGGTTTCGTGGTATGACAATGAGTGGGGTTACAGgtatgtgtgt ... tgtgttgcagCAACCGAGTATTGGACCTTATAGAGCACATGGCATTGGTGGGAGCTCAAAA
EST: gi|192334303|gb|FK024402.1|FK024402
EST:     GCTTCCTTTGTTAAGCTGGTTTCGTGGTATGACAATGAGTGGGGTTACAG                         CAACCGAGTATTGGACCTTATAGAGCACATGGCATTGGTGGGAGCTCAAAA
genomic: GCTTCCTTTGTTAAGCTGGTTTCGTGGTATGACAATGAGTGGGGTTACAGgtatgtgtgt ... tgtgttgcagCAACCGAGTATTGGACCTTATAGAGCACATGGCATTGGTGGGAGCTCAAAA
EST: gi|254326011|gb|GR838892.1|GR838892
EST:     GCTTCCTTTGTTAAGCTGGTTTCGTGGTATGACAATGAGTGGGGTTACAG                         CAACCGAGTATTGGACCTTATAGAGCACATGGCATTGGTGGGAGCTCAAAA
genomic: GCTTCCTTTGTTAAGCTGGTTTCGTGGTATGACAATGAGTGGGGTTACAGgtatgtgtgt ... tgtgttgcagCAACCGAGTATTGGACCTTATAGAGCACATGGCATTGGTGGGAGCTCAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttctgttcatgctgacctttagttgatatttttttgaatggtttgtgttgcagCAACCGAGTATTGGACCTTATAGAGCACATGGCATTGGTGGGAGCTCAAAATTGAACACGATTAGTGTATGTTGTGTTGCAATTCTTGTTGAATAGGTTT
                   tttagttgatattttt  TA-rich tract