1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gtttcccaatcatctgtgatatacccaagatatttggactgtgatgtgtggtatggtatgtgaacagaacatgatactcattcctttctaaacattacagGTGTGCAAAGGAAGCTGGATATGGCAAATGAG
species | Glycine max |
transcript | GLYMA16G08080.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AATCACCAACAATTTTACTTCCCCAAAAGTACAAGCTTCTATAGCTTCAG GTGTGCAAAGGAAGCTGGATATGGCAAAEST: gi|193419048|gb|FK382712.1|FK382712
genomic: AATCACCAACAATTTTACTTCCCCAAAAGTACAAGCTTCTATAGCTTCAGgtgatatagt ... aacattacagGTGTGCAAAGGAAGCTGGATATGGCAAA
EST: AATCACCAACAATTTTAGTTCCCCGAAATTACAAGCTTCTATAGCTTCAG GTGTGCAAAGGAAGCTGGATATGGCAAATGAGEST: gi|208168582|gb|GD968250.1|GD968250
genomic: AATCACCAACAATTTTACTTCCCCAAAAGTACAAGCTTCTATAGCTTCAGgtgatatagt ... aacattacagGTGTGCAAAGGAAGCTGGATATGGCAAATGAG
EST: AAAGTACAAGCTTCTATAGCTTCAG GTGTGCAAAGGAAGCTGGATATEST: gi|208055898|gb|GD851995.1|GD851995
genomic: AAAGTACAAGCTTCTATAGCTTCAGgtgatatagt ... aacattacagGTGTGCAAAGGAAGCTGGATAT
EST: AATCACCAACAATTTTAGTTCCCCGAAATTACAAGCTTCTATAGCTTCAG GTGTGCAAAGGAAGCTGGATATGGCAAATGAG
genomic: AATCACCAACAATTTTACTTCCCCAAAAGTACAAGCTTCTATAGCTTCAGgtgatatagt ... aacattacagGTGTGCAAAGGAAGCTGGATATGGCAAATGAG
gtgtggtatggtatgtgaacagaacatgatactcattcctttctaaacattacagGTGTGCAAAGGAAGCTGGATATGGCAAATGAG
ttctaaa putative branch site (score: 2)
taaacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcccaatcatctgtgatatacccaagatatttggactgtgatgtgtggtatggtatgtgaacagaacatgatactcattcctttctaaacattacagGTGTGCAAAGGAAGCTGGATATGGCAAATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - -ccaatca
- - - - - - - - - - -tacccaa
- - - - - - - - - - - - - - - - - - gactgtg
- - - - - - - - - - - - - - - - - - - - - - tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gtatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacagaac