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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggatggaattttatttggttgattgtttgcaaggcttttggttaatatgacttttgtgatctttattatagtcttaattgtggaatacagGTAGCCGATTTTGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCATTCTCTTGGACATG

Basic information

species Glycine max
transcript GLYMA16G02770.1
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G02770.1 (Glycine max), 3'ss of exon 13
lower sequence: AT1G01320.1 (Arabidopsis thaliana), 3'ss of exon 13
gtaaggatggaattttatttggttg-attgtttgcaaggcttttggttaatatgacttttg-tgatctttattatagtcttaattgtggaatacagGTAGCCGATTTTGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCATTCTCTTGGACATG
||||  |||    |  |||| |||| | ||||  | |    |    |||| ||         | ||    ||| |    || ||   ||||| ||||| || |||||||| |||||||| ||||| ||||| ||||| || |||||||||||||||||||| ||  | ||||| || |||| |||| | ||| |||
gtaa--atgagtctaaattttgttgtagtgttgtctattggtagtattaaaatagtaacaaatcatgcgaatttt--cttttatcacggaatgcagGTTGCAGATTTTGGTTCATTGGAGCTCTCCCCAGTCGATGGCCGGACTCTAACTGATTTTATGCACACAAGAGGTCTTCGGATGCGTTCTTTAGGATATG

upper sequence: GLYMA16G02770.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv15s0046g00740.t01 (Vitis vinifera), 3'ss of exon 13
gtaaggatggaattttatttggttgattgtttgcaaggcttttggttaatatgacttttgtgatctttattatagtctt--------aattgtggaatacagGTAGCCGATTTTGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCATTCTCTTGGACATG
||||  |  ||||  ||| || ||||   |    | | ||    |  |||| |  | | ||||| | | ||   || |         ||||||  ||| ||||| || |||||||| |||||||||||||||||||| ||||| || || || || ||||| ||||||||| | ||||| ||||||| |||||| |||||||
gtaaccactgaataatatctgattgaacttgattatgtctgcatgaaaataaggttgtggtgatttctgtttctgtgtctgcatgaaaattgtccaattcagGTTGCAGATTTTGGTTCATTGGAACTCTCACCAGTGGATGGTCGGACGCTGACCGATTTCATGCATACTAGAGGTCTTCGAATGCGTTCTCTGGGACATG

upper sequence: GLYMA16G02770.1 (Glycine max), 3'ss of exon 13
lower sequence: Vv09s0002g01140.t01 (Vitis vinifera), 3'ss of exon 4
gtaaggatggaattttatttggttgattgtttgcaaggcttttggttaatatgacttttgtgatctttattatagtctt--------aattgtggaatacagGTAGCCGATTTTGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCATTCTCTTGGACATG
||||  |  ||||  ||| || ||||   |    | | ||    |  |||| |  | | ||||| | | ||   || |         ||||||  |||  |||| || |||||||| |||||||||||||||||||| ||||| |  || || |  ||||| ||||||||| | ||||| ||||||| |||||| |||||||
gtaaccactgaataatatctgattgaacttgattatgtctgcatgaaaataaggttgtggtgatttctgtttctgtgtctgcatgaaaattgtccaatttagGTTGCAGATTTTGGTTCATTGGAACTCTCACCAGTGGATGGTCAGACGCTGATCGATTTCATGCATACTAGAGGTCTTCGAATGCGTTCTCTGGGACATG

upper sequence: GLYMA16G02770.1 (Glycine max), 3'ss of exon 13
lower sequence: PP1S363_15V6.1 (Physcomitrella patens), 3'ss of exon 12
--------------------------------------------------------------------------gtaaggatggaattttatttggttgattgtttgcaaggcttttggttaata-tgacttttgtgatctttattatagtcttaattgtggaatacagGTAGCCGATTTTGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCATTCTCTTGGACATG
                                                                          ||     | | | |     | | ||    ||||||  ||  |    |     | | |||    | |   |  || |||   ||| | | | |||||| || || ||||| ||  | || ||||||||||| |||||||| ||||| || ||||| ||||| |||||||||||||  |||| |||  | ||    |
gtaagttcatgtggattaaggaatacgtatgtcgagactgattgataccattaatgtacggaggtgatttgagagtccacttagcactcagcatagctgtgactttgcacagcaataatctggagctcattttgaccaccgcaaccatggtcgctatttttgta-acagGTGGCAGACTTTGGATCCCTTGAGCTCTCACCAGTGGATGGACGTACTCTTACAGATTTCATGCACACTCGGGGTCTACAGATGCGTTCCTTGGGGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttggttaatatgacttttgtgatctttattatagtcttaattgtggaatacagGTAGCCGATTTTGGCTCATTGGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTCGGGGTCTACGAATGCATTCTCTTGGACATG
                                    tcttaat  putative branch site (score: 3)
                       atctttattatagtct  TA-rich tract