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...taatactgacagccctcttactgaatgctatttctctgtttgcccactgacatttacatactaaaagtattagaagttctaactaatttctcatgttcagGTATTAAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGTTTGTCTGGTCATTATACTCTTAAGAGTGATGTTTATAGCTTCGGAGTTGTCA
species | Glycine max |
transcript | GLYMA16G01790.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CTCATCTTTCTGACAGTGGATTGGCAAGCTATATTCCAAATGCAAACCAG GTATTAAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGTTTGEST: gi|23732744|gb|BU764545.1|BU764545
genomic: CTCATCTTTCTGACAGTGGATTGGCAAGCTATATTCCAAATGCAAACCAGgtgatttagt ... tcatgttcagGTATTAAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGTTTG
EST: CTCATCTTTCTGACAGTGGATTGGCAAGCTATATTCCAAATGCAAACCAG GTATTAAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGTTTGEST: gi|4293506|gb|AI437915.1|AI437915
genomic: CTCATCTTTCTGACAGTGGATTGGCAAGCTATATTCCAAATGCAAACCAGgtgatttagt ... tcatgttcagGTATTAAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGTTTG
EST: CTCATCTTTCTGACAGTGGATTGGCAAGCTATATTCCAAATGCAAACCAG GTATTAAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGTTTGEST: gi|254326942|gb|GR836551.1|GR836551
genomic: CTCATCTTTCTGACAGTGGATTGGCAAGCTATATTCCAAATGCAAACCAGgtgatttagt ... tcatgttcagGTATTAAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGTTTG
EST: CTCATCTTTCTGACAGTGGATTGGCAAGCTAT-T-CCAAATGCAAACCAG GTATTAAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGTTTGEST: gi|15664525|gb|BI701896.1|BI701896
genomic: CTCATCTTTCTGACAGTGGATTGGCAAGCTATATTCCAAATGCAAACCAGgtgatttagt ... tcatgttcagGTATTAAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGTTTG
EST: CTCATCTTTCTGACAGTGGATTGGCAAGCTATATTCCAAATGCAAACCAG GTATTAAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGTTTGEST: gi|254326943|gb|GR836552.1|GR836552
genomic: CTCATCTTTCTGACAGTGGATTGGCAAGCTATATTCCAAATGCAAACCAGgtgatttagt ... tcatgttcagGTATTAAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGTTTG
EST: TCTGACAGTGGATTGGCAAGC--TATTCCAAATGCAAACCAG GTATTAAACAATAATGCTGGATCTGGATATGAAGCT-CCGAAGTTGGTTTG
genomic: TCTGACAGTGGATTGGCAAGCTATATTCCAAATGCAAACCAGgtgatttagt ... tcatgttcagGTATTAAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGTTTG
actgacatttacatactaaaagtattagaagttctaactaatttctcatgttcagGTATTAAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGTTTGTCTGGTCATTATACTCTTAAGAGTGATGTTTATAGCTTCGGAGTTGTCA
tttctcat CT-rich tract
atttacatactaaaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatactgacagccctcttactgaatgctatttctctgtttgcccactgacatttacatactaaaagtattagaagttctaactaatttctcatgttcagGTATTAAACAATAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGTTTGTCTGGTCATTATACTCTTAAGAGTGATGTTTATAGCTTCGGAGTTGTCA
- -tactgac
- - - - - - ccctctt
- - - - - - - - - - - gaatgct
- - - - - - - - - - - - - - - - - - - - tgcccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - tacatac