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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggatttcacttgtaatatcgcattcgtgactctgaatattgatacttcagaaagttatttaattttattatcaatctatttgcagTATGGACAACTTCTTGGTCATCCTAGGCAAGTTTTATACATGCCAAGTTACCTCCCT

Basic information

species Glycine max
transcript GLYMA16G00780.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270854|gb|BM887110.1|BM887110
EST:     AAGCGGCACAAATGCCATCCCAACCATATTTTCATCCAAATGGACCACAG                         TATGGACAACTTCTTGGTCATCCTAGGCAAGTTTTATACATGCCAAGTTAC
genomic: AAGCGGCACAAATGCCATCCCAACCATATTTTCATCCAAATGGACCACAGgtgggatttc ... ctatttgcagTATGGACAACTTCTTGGTCATCCTAGGCAAGTTTTATACATGCCAAGTTAC
EST: gi|27445894|gb|CA953017.1|CA953017
EST:     AAGCGGCACAAATGCCATCCCAACCATATTTTCATCCAAATGGACCACAG                         TATGGACAACTTCTTGGTCATCCTAGGCAAGTTTTATACATGCCAAGTTAC
genomic: AAGCGGCACAAATGCCATCCCAACCATATTTTCATCCAAATGGACCACAGgtgggatttc ... ctatttgcagTATGGACAACTTCTTGGTCATCCTAGGCAAGTTTTATACATGCCAAGTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgaatattgatacttcagaaagttatttaattttattatcaatctatttgcagTATGGACAACTTCTTGGTCATCCTAGGCAAGTTTTATACATGCCAAGTTACCTCCCT
                                            tctattt  CT-rich tract
     atattgatacttcaga  TA-rich tract