1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtacaacctttatgatgtgaagttttgaataatatcaattaacaaataacgtttcacacgctcactgttttatgtgatttcttgtgcagTTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAG
species | Glycine max |
transcript | GLYMA15G43170.1 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: TCTATTTGATGCAGAAGGAAAAATTAAGAAATATGACAATCCGGAACAAA TTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAGEST: gi|193374050|gb|FK340738.1|FK340738
genomic: TCTATTTGATGCAGAAGGAAAAATTAAGAAATATGACAATCCAGAACAAAgtacaacctt ... tcttgtgcagTTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAG
EST: TCTATTTGATGCAGAAGGAAAAATTAAGAAATATGACAATCCAGAACAAA TTCTCGAAGAATTCTTCCCACTTEST: gi|208062403|gb|GD858073.1|GD858073
genomic: TCTATTTGATGCAGAAGGAAAAATTAAGAAATATGACAATCCAGAACAAAgtacaacctt ... tcttgtgcagTTCTCGAAGAATTCTTCCCACTT
EST: CAGAAGGAAAAATTAAGAAATATGACAATCCAGAACAAA TTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAGEST: gi|193339286|gb|FK303527.1|FK303527
genomic: CAGAAGGAAAAATTAAGAAATATGACAATCCAGAACAAAgtacaacctt ... tcttgtgcagTTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAG
EST: TCTATTTGATGCAGAAGGAAAAATTAAGAAATATGACAATCCGGAACAAA TTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAGEST: gi|193350604|gb|FK316306.1|FK316306
genomic: TCTATTTGATGCAGAAGGAAAAATTAAGAAATATGACAATCCAGAACAAAgtacaacctt ... tcttgtgcagTTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAG
EST: TCTATTTGATGCAGAAGGAAAAATTAAGAAATATGACAATCCGGAACAAA TTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAG
genomic: TCTATTTGATGCAGAAGGAAAAATTAAGAAATATGACAATCCAGAACAAAgtacaacctt ... tcttgtgcagTTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAG
tcaattaacaaataacgtttcacacgctcactgttttatgtgatttcttgtgcagTTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAG
tttcttgt CT-rich tract
taacaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacaacctttatgatgtgaagttttgaataatatcaattaacaaataacgtttcacacgctcactgttttatgtgatttcttgtgcagTTCTCGAAGAATTCTTCCCACTTCGGCTGGAGTATTATGAGAGAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA