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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcctcaataatttcaatctcttcatagcttggtgatcattccatttttattgtatatcttctcataagcccaatcattttttttatcattttcctttgtgcagGTCAGGGACGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGATGCTATCTTAAGTATCACTCAG

Basic information

species Glycine max
transcript GLYMA15G42640.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17518777|gb|BM187819.1|BM187819
EST:     GTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACTATCAAG                         GTCAGGGACGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT
genomic: GTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACTATCAAGgtaactcctc ... ctttgtgcagGTCAGGGACGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT
EST: gi|58018599|gb|CX705341.1|CX705341
EST:     GTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACTATCAAG                         GTCAGGGACGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT
genomic: GTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACTATCAAGgtaactcctc ... ctttgtgcagGTCAGGGACGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT
EST: gi|18040165|gb|BM308459.1|BM308459
EST:     GTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACTATCAAG                         GTCAGGGACGATCCTGTCTTCCGT--AGAAGGATCTAATATTCATGTAGAT
genomic: GTGCAGATCCTGATGGAGATAATCCTGGTGATCTTTATGTTACTATCAAGgtaactcctc ... ctttgtgcagGTCAGGGACGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attgtatatcttctcataagcccaatcattttttttatcattttcctttgtgcagGTCAGGGACGATCCTGTCTTCCGTAGAGAAGGATCTAATATTCATGTAGATGCTATCTTAAGTATCACTCAG
                         tcattttttttatcat  CT-rich tract
                       aatcattttttttatc  TA-rich tract